Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K3G18_RS12440 Genome accession   NZ_CP080629
Coordinates   2437509..2438276 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain YPS-32     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2432509..2443276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS12420 (K3G18_12420) ppsR 2432684..2433496 (-) 813 WP_032722128.1 pyruvate, water dikinase regulatory protein -
  K3G18_RS12425 (K3G18_12425) ccpN 2433522..2434160 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  K3G18_RS12430 (K3G18_12430) glyS 2434293..2436332 (-) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  K3G18_RS12435 (K3G18_12435) glyQ 2436325..2437212 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  K3G18_RS12440 (K3G18_12440) recO 2437509..2438276 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  K3G18_RS12445 (K3G18_12445) yqzL 2438313..2438456 (-) 144 WP_003230053.1 YqzL family protein -
  K3G18_RS12450 (K3G18_12450) era 2438604..2439509 (-) 906 WP_003230051.1 GTPase Era -
  K3G18_RS12455 (K3G18_12455) - 2439490..2439900 (-) 411 WP_032722130.1 cytidine deaminase -
  K3G18_RS12460 (K3G18_12460) unpK 2440019..2440390 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  K3G18_RS12465 (K3G18_12465) ybeY 2440371..2440844 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  K3G18_RS12470 (K3G18_12470) pgpH 2440845..2442980 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=594524 K3G18_RS12440 WP_014477369.1 2437509..2438276(-) (recO) [Bacillus subtilis strain YPS-32]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=594524 K3G18_RS12440 WP_014477369.1 2437509..2438276(-) (recO) [Bacillus subtilis strain YPS-32]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996