Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K3G18_RS10915 Genome accession   NZ_CP080629
Coordinates   2169362..2169982 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain YPS-32     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164362..2174982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS10875 (K3G18_10875) ptsA 2165493..2165999 (-) 507 WP_026009842.1 PTS glucose transporter subunit IIA -
  K3G18_RS10880 (K3G18_10880) ypqA 2166137..2166556 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  K3G18_RS10885 (K3G18_10885) sppG 2166577..2166954 (-) 378 WP_004398696.1 YppG family protein -
  K3G18_RS10890 (K3G18_10890) yppF 2167142..2167330 (+) 189 WP_003230690.1 YppF family protein -
  K3G18_RS10895 (K3G18_10895) yppE 2167369..2167740 (-) 372 WP_003246080.1 YppE family protein -
  K3G18_RS10900 (K3G18_10900) yppD 2167786..2168031 (-) 246 WP_032722030.1 YppD family protein -
  K3G18_RS10905 (K3G18_10905) sspM 2168230..2168334 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  K3G18_RS10910 (K3G18_10910) yppC 2168359..2169321 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  K3G18_RS10915 (K3G18_10915) recU 2169362..2169982 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  K3G18_RS10920 (K3G18_10920) ponA 2170004..2172748 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  K3G18_RS10925 (K3G18_10925) ypoC 2172824..2173318 (-) 495 WP_009967579.1 YpoC family protein -
  K3G18_RS10930 (K3G18_10930) nth 2173315..2173974 (-) 660 WP_009967580.1 endonuclease III -
  K3G18_RS10935 (K3G18_10935) dnaD 2173993..2174691 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=594512 K3G18_RS10915 WP_004399067.1 2169362..2169982(+) (recU) [Bacillus subtilis strain YPS-32]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=594512 K3G18_RS10915 WP_004399067.1 2169362..2169982(+) (recU) [Bacillus subtilis strain YPS-32]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1