Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M5598_RS02545 Genome accession   NZ_CP097355
Coordinates   523992..525986 (+) Length   664 a.a.
NCBI ID   WP_021486725.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 518992..530986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS02520 (M5598_02520) rsmE 519144..519875 (-) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  M5598_RS02525 (M5598_02525) endA 520000..520695 (-) 696 WP_031816794.1 deoxyribonuclease I -
  M5598_RS02530 (M5598_02530) - 520815..521312 (-) 498 WP_020835372.1 SprT family zinc-dependent metalloprotease -
  M5598_RS02535 (M5598_02535) - 521379..522176 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  M5598_RS02540 (M5598_02540) metK 522521..523675 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  M5598_RS02545 (M5598_02545) recP/tkt 523992..525986 (+) 1995 WP_021486725.1 transketolase Machinery gene
  M5598_RS02550 (M5598_02550) - 526064..526957 (-) 894 WP_025579974.1 LysR family transcriptional regulator -
  M5598_RS02555 (M5598_02555) - 527094..529052 (+) 1959 WP_031816792.1 ligand-gated channel protein -
  M5598_RS02560 (M5598_02560) epd 529183..530220 (+) 1038 WP_031816791.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71969.10 Da        Isoelectric Point: 4.7973

>NTDB_id=594355 M5598_RS02545 WP_021486725.1 523992..525986(+) (recP/tkt) [Vibrio parahaemolyticus strain 16-VB00198]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQMA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGGYILKDSDGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=594355 M5598_RS02545 WP_021486725.1 523992..525986(+) (recP/tkt) [Vibrio parahaemolyticus strain 16-VB00198]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGCTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGACCACTTCACTTACGTGTTCATGGGTGATGGTTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACTCTAGGCCTGGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGATGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCACGTAATCC
CAGCAGTAGATGGCCATGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGACCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCTCCAAACAAATCGGGTTCTCACGACTGTCACGGCGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCGCGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCGGCGTGGAACGCTAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAATGGCGAACTTCCTGCTGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAATGCTCTAGAAGCTTTCGGTCAAATGCTACCTGAAT
TCATGGGCGGCTCTGCTGACCTAGCGCCTTCTAACCTAACCATGTGGTCGGGTTCTAAGTCTCTAGAAGCGAACGATTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATTATGAACGGTATCGCACTACACGGTGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTCTGATGAAAATTC
AGAACATCCAAGTGTACACACACGATTCTATCGGTCTTGGCGAAGATGGTCCAACTCACCAACCAGTTGAGCAAATGGCG
TCTCTACGTTTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAACCACGTAGCGCTGAGCAAGTTG
CAGACATCGCGAAAGGTGGTTACATCCTGAAAGACAGCGATGGCAAACCTGAGCTAATCCTAATCGCAACAGGTTCTGAA
GTTGAGTTAGCAGTGAAAGCCGCTGAACAACTAACAGCAGAAGGTAAGAAAGTACGCGTTGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCCGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCACGTATCGCTATTGAAGCGG
GCATCGCAGATTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, C-terminal domain (Transketolase_C)

(541-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.402

98.946

0.479