Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   ABVS_RS08520 Genome accession   NZ_CP080576
Coordinates   1777818..1780040 (-) Length   740 a.a.
NCBI ID   WP_222111907.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772818..1785040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS08495 (ABVS_1777) - 1773013..1773276 (-) 264 WP_004729352.1 YdcH family protein -
  ABVS_RS08500 (ABVS_1778) - 1773366..1773695 (-) 330 WP_004278573.1 chaperone modulator CbpM -
  ABVS_RS08505 (ABVS_1779) - 1774180..1774641 (-) 462 WP_005102907.1 DUF2147 domain-containing protein -
  ABVS_RS08510 (ABVS_1780) - 1774963..1775838 (-) 876 WP_004278571.1 Hsp33 family molecular chaperone HslO -
  ABVS_RS08515 (ABVS_1781) - 1775889..1777742 (-) 1854 WP_085064952.1 cation:proton antiporter -
  ABVS_RS08520 (ABVS_1782) priA 1777818..1780040 (-) 2223 WP_222111907.1 primosomal protein N' Machinery gene
  ABVS_RS08525 (ABVS_1783) gspF 1780191..1781396 (+) 1206 WP_085064954.1 type II secretion system inner membrane protein GspF -
  ABVS_RS08530 (ABVS_1784) gspG 1781476..1781910 (+) 435 WP_085064955.1 type II secretion system major pseudopilin GspG -
  ABVS_RS08535 (ABVS_1785) - 1782195..1782530 (+) 336 WP_085064956.1 hypothetical protein -
  ABVS_RS08540 (ABVS_1786) lnt 1782686..1784245 (-) 1560 WP_085064957.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84204.26 Da        Isoelectric Point: 8.6413

>NTDB_id=594199 ABVS_RS08520 WP_222111907.1 1777818..1780040(-) (priA) [Acinetobacter lwoffii strain VS15]
MQNSHTDSSLLYRVRVAVPVHVFDCFDYTMSAEQFEQAQIGARILVSFGRQNLVGVIIEKLSADTPLDPRFKLKAVTELL
DERAIIDAKVLSLLTWSAQYYQFPIGEVVHSALPTLLRQGKPYNLLARTWKLLDPDAEAKVRRSDKQQEAYRILKLHPVG
TTENVLNMAGIETATLKALEKKEICACVLEPQDFNPQPMQLAQMPLTANPEQKHAVEQVLKYRNQYQAFLLDGLTGSGKT
EVYLQIMEQVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQSAETGKASIVLGTRSAIYTPM
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYALVQHGKMQALELNQRAGTALMPKIHI
LDLKVAQKKHGISLQLIQDIKKRLEKKEQVLIFLNRRGYAPVLLCGSCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCHHQELITLGMGTGKVEEHLNELFPDFEVIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIVQVAGRAGRGEYKGDVYLQTLRPDHALLNTLVNENYRVFAQQTLKERQMARM
PPYRYAILIRCESKDQVQNTEFLQKHAAALRQYPDLALDIWGPIPAPMERKAGRYQSHMVLLSADRPRLHYYVRSWWQNM
LHDKPSSMKLTLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=594199 ABVS_RS08520 WP_222111907.1 1777818..1780040(-) (priA) [Acinetobacter lwoffii strain VS15]
ATGCAAAATTCTCACACCGATTCCAGTCTACTTTATCGCGTACGCGTTGCTGTACCTGTACATGTATTTGATTGTTTTGA
TTACACAATGAGTGCAGAACAATTTGAACAGGCGCAGATTGGCGCACGTATACTGGTATCGTTTGGTCGGCAGAATCTGG
TGGGGGTGATTATCGAAAAACTGTCCGCAGACACTCCTCTCGATCCGCGGTTTAAACTTAAGGCAGTGACCGAACTGCTC
GATGAACGCGCCATTATAGATGCCAAAGTTTTAAGTTTGTTGACATGGTCAGCGCAGTATTACCAGTTTCCGATCGGTGA
AGTCGTCCACAGTGCCCTGCCGACTCTGTTGCGTCAGGGTAAGCCTTATAACCTGCTGGCCCGTACCTGGAAATTACTGG
ACCCTGATGCCGAGGCCAAAGTACGCCGTTCGGACAAGCAGCAGGAAGCTTACCGGATTTTAAAACTGCATCCGGTCGGG
ACCACTGAAAATGTGCTGAACATGGCCGGGATTGAAACCGCGACCTTAAAAGCGCTGGAGAAAAAAGAGATTTGCGCCTG
TGTGCTGGAGCCACAAGATTTCAATCCGCAGCCGATGCAGCTGGCACAAATGCCGCTGACCGCCAATCCTGAACAAAAAC
ATGCAGTCGAACAGGTATTAAAATATCGCAATCAATATCAAGCTTTTTTACTGGATGGTCTGACCGGCAGCGGTAAAACT
GAAGTGTATTTGCAGATCATGGAACAGGTACTGAAACAGGGCAAACAGGTGCTGGTGCTGGTGCCGGAAATCGGCCTGAC
GCCGCAAACCATCAGCCGTTTTCAGTCCCGTTTTCATTGCCATATTGCGTTGCTGCATTCCGGGCTGAATGATTCCAAAC
GGCTACAAGCCTGGCAGTCGGCGGAAACCGGCAAAGCCTCAATCGTACTCGGTACACGTTCTGCCATTTATACCCCGATG
CCGAATCTGGGCCTGATCATTCTGGATGAAGAACATGACCTGTCCTTTAAACAGCAGGAAGGCTTCCGCTATCATGCCCG
CGATGTCGCCCTGTACCGCGGCCATTTACAGCAATGTCCGGTAATCTTAGGGTCAGCCACACCAAGCATTGACAGTTATG
CGCTGGTGCAACATGGCAAGATGCAGGCACTGGAGCTGAACCAGCGTGCCGGCACGGCCTTGATGCCCAAAATCCATATT
CTGGATTTAAAAGTTGCGCAAAAAAAGCATGGGATTAGCCTGCAATTGATTCAGGACATCAAAAAGCGCCTGGAGAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGCCGTGGCTATGCCCCCGTCCTGCTGTGTGGCAGCTGTGGCTGGCAGGCGAAAT
GTCCGCACTGTGATGCCAACTTCACTGTACACCGCCAGCCTTATCAGCATCTACATTGCCATCACTGCGGTACTATTCAC
CGTATGCCGGAACACTGCCCACAATGTCACCATCAGGAACTGATTACACTGGGTATGGGCACCGGCAAAGTCGAAGAGCA
TCTGAATGAGCTCTTTCCGGATTTTGAGGTGATTCGGGTCGATCGCGATTCCACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATGACAAGATTCAGAAAAGCGAACCTGCCATTTTGCTTGGCACCCAGATGCTGGCCAAAGGCCATCATTTTCCTTAT
GTGACGCTGGTGGCGATTCTGGATATCGATTCCGGTCTGCTCAGTGTGGATTTCCGTGCTACTGAACGGACTGCACAACT
GATTGTGCAGGTGGCAGGCCGCGCAGGCCGTGGTGAATATAAGGGTGATGTTTACCTACAGACCCTCAGACCTGATCATG
CCCTGCTGAATACCCTGGTCAATGAAAATTATCGCGTATTTGCCCAGCAAACCTTAAAAGAACGGCAGATGGCCAGAATG
CCGCCCTACCGTTATGCCATCCTGATTCGCTGTGAATCCAAGGATCAGGTACAAAATACCGAATTCTTACAGAAACATGC
GGCCGCACTCAGGCAATATCCTGATCTGGCGCTGGACATCTGGGGACCGATTCCTGCACCCATGGAACGTAAGGCCGGAC
GCTATCAGTCGCATATGGTGCTATTGTCAGCGGATCGTCCACGTTTGCATTACTATGTGCGTAGCTGGTGGCAAAACATG
CTGCATGACAAACCTTCTAGCATGAAGCTCACGCTGGACATCGACCCTCAGGAACTGAGCTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

70.845

99.189

0.703