Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABVS_RS08235 Genome accession   NZ_CP080576
Coordinates   1710430..1710756 (+) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705430..1715756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS08210 (ABVS_1719) hemC 1706113..1707036 (+) 924 WP_004647306.1 hydroxymethylbilane synthase -
  ABVS_RS08215 (ABVS_1720) - 1707036..1707815 (+) 780 WP_004278631.1 uroporphyrinogen-III synthase -
  ABVS_RS08220 (ABVS_1721) - 1707812..1708651 (+) 840 WP_004278630.1 hypothetical protein -
  ABVS_RS08225 (ABVS_1722) - 1708658..1709851 (+) 1194 WP_222111904.1 heme biosynthesis protein HemY -
  ABVS_RS08230 (ABVS_1723) - 1709860..1710288 (+) 429 WP_004278628.1 acyl-CoA thioesterase -
  ABVS_RS08235 (ABVS_1724) hns 1710430..1710756 (+) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABVS_RS08240 (ABVS_1725) gspN 1710939..1711682 (+) 744 WP_222111905.1 type II secretion system protein N -
  ABVS_RS08245 (ABVS_1726) - 1711682..1712536 (+) 855 WP_085064735.1 type II secretion system protein N -
  ABVS_RS08250 (ABVS_1727) gspD 1712575..1714839 (+) 2265 WP_004278624.1 type II secretion system secretin GspD -
  ABVS_RS08255 (ABVS_1728) - 1714902..1715561 (+) 660 WP_004278623.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=594198 ABVS_RS08235 WP_026055760.1 1710430..1710756(+) (hns) [Acinetobacter lwoffii strain VS15]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=594198 ABVS_RS08235 WP_026055760.1 1710430..1710756(+) (hns) [Acinetobacter lwoffii strain VS15]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAGTCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGATGCTTATCAGCAAATTTTGGCAGTTGCTGAGAAAGTTGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAACGTAAGAAATCGTCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787