Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABVS_RS04475 Genome accession   NZ_CP080576
Coordinates   924642..925499 (-) Length   285 a.a.
NCBI ID   WP_222112265.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 919642..930499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS04455 (ABVS_0931) miaB 920022..921479 (+) 1458 WP_222112263.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ABVS_RS04460 (ABVS_0932) - 921517..922593 (+) 1077 WP_222112264.1 PhoH family protein -
  ABVS_RS04465 (ABVS_0933) ybeY 922616..923098 (+) 483 WP_071850834.1 rRNA maturation RNase YbeY -
  ABVS_RS04470 (ABVS_0934) - 923297..924529 (+) 1233 WP_004730312.1 transposase -
  ABVS_RS04475 (ABVS_0935) tonB2 924642..925499 (-) 858 WP_222112265.1 energy transducer TonB Machinery gene
  ABVS_RS04480 (ABVS_0937) - 925763..926449 (+) 687 WP_222112266.1 hypothetical protein -
  ABVS_RS04485 (ABVS_0938) - 926609..927322 (+) 714 WP_222112267.1 DUF3108 domain-containing protein -
  ABVS_RS04490 (ABVS_0939) - 927411..927986 (+) 576 WP_222112268.1 xanthine phosphoribosyltransferase -
  ABVS_RS04495 (ABVS_0940) - 928227..929159 (-) 933 WP_222112269.1 IS5 family transposase -
  ABVS_RS04500 (ABVS_0941) - 929649..930002 (+) 354 Protein_868 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32652.17 Da        Isoelectric Point: 8.3844

>NTDB_id=594179 ABVS_RS04475 WP_222112265.1 924642..925499(-) (tonB2) [Acinetobacter lwoffii strain VS15]
MPLVRTWWKDRVFSSAVLAAAMLHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDQKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQQAGEELQKSLDMLQQQQQLSFEEKVLMTTLSWQKQAEENQRKKMQGQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKASVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=594179 ABVS_RS04475 WP_222112265.1 924642..925499(-) (tonB2) [Acinetobacter lwoffii strain VS15]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCGAGTGTTTAGCAGTGCAGTGCTTGCCGCAGCCATGCTGCATTTGATCGT
GCTGACACTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCGGTCAGCTTGCGCCAGACTGATC
AAAAAATTGAACATGCCGATTTTCTGGCTCAGACAGACCAGCAGGGTTCCGGTCAGTTTAGAGAGGCGCATCGCATGTCG
AGTGATATGCCCTCGCCATTAATGGAACAGCAGGCCGGGGAAGAGCTGCAAAAAAGTCTGGATATGCTGCAACAGCAACA
ACAGCTCAGTTTTGAAGAAAAAGTCCTGATGACCACTTTGAGCTGGCAAAAGCAGGCGGAGGAAAATCAGCGTAAAAAAA
TGCAGGGGCAATTACAAAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTTGAAGCGCAATATTTACAGCGTCAA
CAAAATTTCAGTCGTCAGCAAAAAATTAAAACTGTAGATGGGATCCAGGCCAAGCAGGATGTTTCGGCCGCCTATCTGGA
AAAGTTCCGCGAGAAAGTGGAATTCTATGGGAACCGTTATTATCCGGAAGCAGCCAAACAACAGAATCTGGCAGGGGAAG
TGCGGCTGATGGTGATCCTGAACCAGAATGGCGGAATTCGTGCCATTCGGCTGATTGACAGTTCGGGACATGCCATGCTG
GACGAAGCAGCCAAAGCTTCCGTGCGTAAGGCAGCACCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
GCGGGTGATTCGTACCTGGCGATTTGATCCGGCTGAAGCAGAGTTTGAAGTGCGTTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716