Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K2W87_RS04775 Genome accession   NZ_CP080569
Coordinates   1049912..1051711 (-) Length   599 a.a.
NCBI ID   WP_220382131.1    Uniprot ID   -
Organism   Apilactobacillus kunkeei strain 7K4AA     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1044912..1056711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2W87_RS04745 (K2W87_04745) - 1045254..1045766 (-) 513 WP_034531812.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  K2W87_RS04750 (K2W87_04750) - 1045781..1046632 (-) 852 WP_041152404.1 methyltransferase domain-containing protein -
  K2W87_RS04755 (K2W87_04755) - 1046728..1047615 (-) 888 WP_041152405.1 RluA family pseudouridine synthase -
  K2W87_RS04760 (K2W87_04760) - 1047608..1048417 (-) 810 WP_034534499.1 NAD kinase -
  K2W87_RS04765 (K2W87_04765) - 1048420..1049052 (-) 633 WP_034534502.1 GTP pyrophosphokinase family protein -
  K2W87_RS04770 (K2W87_04770) - 1049187..1049873 (+) 687 WP_080695542.1 DsbA family protein -
  K2W87_RS04775 (K2W87_04775) pepF 1049912..1051711 (-) 1800 WP_220382131.1 oligoendopeptidase F Regulator
  K2W87_RS04780 (K2W87_04780) - 1051750..1052832 (-) 1083 WP_220382132.1 competence protein CoiA -
  K2W87_RS04785 (K2W87_04785) - 1052899..1053963 (-) 1065 WP_051592215.1 adaptor protein MecA -
  K2W87_RS04790 (K2W87_04790) - 1054024..1054785 (-) 762 WP_034534506.1 MBL fold metallo-hydrolase -
  K2W87_RS04795 (K2W87_04795) - 1054878..1055330 (+) 453 WP_034534508.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69065.12 Da        Isoelectric Point: 4.5990

>NTDB_id=594130 K2W87_RS04775 WP_220382131.1 1049912..1051711(-) (pepF) [Apilactobacillus kunkeei strain 7K4AA]
MSEVQQLPKRSEVPEKLTWDLTTIYKTDDDFEADFKECVKEVESVEKLKTDHFDAKTLLGDLKAIEKLERKVEKLYVYSS
LKSDADTSNSEYQSMNARCADLASKASSALAWFEPAVLNISEDNLKKMLVEESELADYTHYFDELFSQKDHILDAEHEKI
LSSLGNIFDTPSKVYGVMTNSDLKFPVVSDEDGNKVELSNGVYSKLLESTDRSVRKEAFQQLYTVYNQFKNTLASTLSGE
VKVHNFRASMRHFSSAKEAALSNNHIDEKVYQQLIDTVNKYLPLLHRYVKLRKKLLSLDEMHMYDLYTPLFGNSPISYNF
DEAKEESIKALSILGDDYIDHIKEEFNNRWIDVVENKGKRSGAYSSGVYDTNPYILLNWQDNLDNLFTLVHESGHSMHSY
YTTHNQPFQYGDYSIFLAEIASTTNENILTDYLLKNTDDVEVKKYVLNHFLDGFKGTIFRQTQFAEFEDFAHQQEQAGNP
LTAKMLSDFYYKLNQRYYGDGVVSDPEIAYEWARIPHFYMNYYVYQYATGFAAAIDLSDGICDNDQEAIDKYIGYLKSGS
SDYPLNVMKKAGIDMTNADYLENAFKVFEERLNELESLI

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=594130 K2W87_RS04775 WP_220382131.1 1049912..1051711(-) (pepF) [Apilactobacillus kunkeei strain 7K4AA]
ATGAGTGAAGTACAACAATTACCAAAGAGATCAGAAGTACCAGAAAAATTAACCTGGGACTTAACAACTATTTATAAGAC
AGATGATGACTTTGAAGCGGATTTCAAAGAATGCGTCAAGGAAGTCGAATCCGTGGAAAAGTTAAAGACTGATCATTTTG
ATGCAAAAACACTTTTAGGTGATTTAAAAGCAATCGAAAAACTAGAACGTAAAGTGGAAAAATTATATGTATACTCATCA
TTGAAGAGTGATGCTGATACATCAAATTCTGAATACCAAAGCATGAATGCTAGATGTGCTGATTTAGCATCTAAAGCATC
ATCAGCACTAGCATGGTTTGAACCAGCGGTTTTAAATATTAGTGAAGATAACCTAAAGAAGATGCTAGTTGAAGAATCAG
AATTAGCAGATTACACACACTATTTTGATGAACTATTCAGCCAAAAGGACCATATCCTGGATGCTGAACATGAAAAAATT
CTATCAAGTTTAGGTAACATCTTTGATACCCCTTCAAAAGTATATGGTGTAATGACCAATTCCGACTTGAAGTTCCCAGT
GGTATCAGACGAAGATGGTAACAAGGTCGAACTATCAAATGGTGTCTACAGTAAGTTACTTGAATCCACAGACAGAAGTG
TTCGTAAGGAAGCATTCCAACAGTTATACACAGTTTATAACCAATTCAAGAACACATTAGCATCAACACTTTCTGGTGAA
GTGAAGGTGCATAACTTTAGAGCTTCAATGCGTCACTTTAGCTCAGCTAAGGAAGCTGCATTGAGCAATAACCACATCGA
TGAAAAGGTATACCAACAACTAATTGATACGGTTAATAAGTACCTACCTTTATTACATCGTTACGTGAAACTAAGAAAGA
AATTACTTTCATTAGACGAAATGCACATGTATGACTTGTACACACCATTATTCGGTAACTCACCAATCTCATACAATTTT
GATGAAGCCAAGGAAGAATCAATCAAGGCGTTATCAATTCTTGGGGATGATTACATTGATCATATCAAGGAAGAATTTAA
CAATCGTTGGATTGATGTAGTTGAAAATAAGGGAAAGAGAAGTGGGGCATACTCATCAGGAGTATACGACACTAACCCAT
ATATCCTTTTAAACTGGCAAGATAACCTTGATAACTTGTTTACACTGGTTCATGAATCAGGTCACAGTATGCACAGTTAC
TACACAACCCATAATCAACCATTCCAATATGGTGATTACTCAATCTTCTTAGCCGAAATCGCATCAACCACTAACGAAAA
TATCTTAACAGATTATCTTTTGAAGAATACCGATGATGTTGAAGTTAAGAAGTACGTATTAAATCACTTCCTAGATGGTT
TCAAGGGAACTATTTTCAGACAAACTCAATTTGCTGAATTTGAAGACTTTGCTCACCAACAAGAACAAGCTGGTAATCCA
CTAACAGCTAAGATGTTAAGTGATTTCTACTACAAGCTAAACCAACGCTATTATGGTGATGGAGTAGTATCTGATCCAGA
AATTGCATATGAATGGGCTAGAATTCCGCATTTCTACATGAATTACTATGTATATCAATACGCAACTGGTTTTGCAGCCG
CCATTGATTTATCAGATGGCATCTGTGACAACGACCAAGAAGCAATTGATAAGTACATCGGTTACTTAAAATCAGGTAGT
TCTGATTATCCATTAAACGTAATGAAAAAAGCTGGTATTGACATGACTAATGCAGATTACCTAGAAAATGCATTCAAGGT
ATTTGAAGAAAGATTAAACGAATTAGAATCATTAATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.438

98.664

0.508