Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K2W87_RS01890 Genome accession   NZ_CP080569
Coordinates   474787..476163 (+) Length   458 a.a.
NCBI ID   WP_053795188.1    Uniprot ID   A0A0R1FTB0
Organism   Apilactobacillus kunkeei strain 7K4AA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469787..481163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2W87_RS01865 (K2W87_01865) - 470183..471136 (+) 954 WP_220382471.1 DMT family transporter -
  K2W87_RS01870 (K2W87_01870) - 471151..471819 (+) 669 WP_054604606.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  K2W87_RS01875 (K2W87_01875) - 471855..473195 (-) 1341 WP_220382472.1 aminopeptidase C -
  K2W87_RS01880 (K2W87_01880) rpiA 473300..473989 (-) 690 WP_053795186.1 ribose-5-phosphate isomerase RpiA -
  K2W87_RS01885 (K2W87_01885) - 474223..474759 (+) 537 WP_220382473.1 dUTP diphosphatase -
  K2W87_RS01890 (K2W87_01890) radA 474787..476163 (+) 1377 WP_053795188.1 DNA repair protein RadA Machinery gene
  K2W87_RS01895 (K2W87_01895) - 476185..477276 (+) 1092 WP_220382474.1 PIN/TRAM domain-containing protein -
  K2W87_RS01900 (K2W87_01900) gltX 477386..478876 (+) 1491 WP_220382475.1 glutamate--tRNA ligase -
  K2W87_RS01905 (K2W87_01905) cysS 478997..480403 (+) 1407 WP_053795191.1 cysteine--tRNA ligase -
  K2W87_RS01910 (K2W87_01910) - 480404..480826 (+) 423 WP_034534704.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49736.00 Da        Isoelectric Point: 6.8370

>NTDB_id=594118 K2W87_RS01890 WP_053795188.1 474787..476163(+) (radA) [Apilactobacillus kunkeei strain 7K4AA]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSTHRMDFNGQQAKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKKQRVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLREVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=594118 K2W87_RS01890 WP_053795188.1 474787..476163(+) (radA) [Apilactobacillus kunkeei strain 7K4AA]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCCAAGTACTTGGGACATTGTCCTAACTG
TGGAAAATGGAATACATTTGAAGAACAAACCGTTCAAAAAGAAACATCGAGTTTGAAATCAACTCACCGAATGGATTTCA
ATGGTCAGCAAGCAAAACCACAACTAATCAAAGATGTTAAGTTTGAAAAGGAATCACGTTTTGAAACTGAGTCCCAAGAA
TTTAATCGTGTATTAGGTGGGGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGGGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGACAATTAGGTGCTAAGAAACAACGTGTCTTGTATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTAAGAGCGGAACGCTTATCCGTGAATGGCTCCAACATGTATCTATATCCAGAAACCGATATGGGTGCTATC
AAGTCTGCCATTGATGAGATTAAACCGGATGCAGTCGTAATTGACTCCGTTCAAACTATTTCTGAACCAGAGGTTGATTC
CGCAATCGGTTCCGTATCACAGGTAAGAGCAATTACCGCAGATTTAATGTCTATTGCAAAGACCAATGGAATTACAATAT
TTGTGGTCGGCCACGTTACTAAGGGTGGATCAATTGCTGGACCTAAGACTTTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGTGACATGCATCATTCCTACCGTATTTTAAGAGCTGTGAAGAACCGTTTTGGTTCAACCGACGAATTAGGGAT
TTTTGACATGCAAGAATCCGGATTACGAGAAGTTGCTAATCCATCAGAAGTCTTCTTGGAAGAACGTTTGAAGGACGCCA
ATGGTTCTGCAATCGTTGTCTCAATTGAAGGAACTAGACCAATCCTAGTCGAAATTCAGGCATTGGTAACGCCATCCGTA
TTTGGAAATGCTCAAAGAACCGCTACCGGGATTGACCGTAACCGTGTAGCCGTTTTAATGGCGGTACTTGAAAAACGTGC
AGGACTAATGCTACAAAACCAAGACGCCTTCTTGAAGGCGGCTGGTGGAGTTAAGTTAAACGAACCAGCAATTGATTTGG
CAGTAGCCATTAGTGTGGCATCGAGTTACAAGAACAGGGGAACCGACCCTAGTGAATGCTATATCGGTGAAATTGGTTTA
ACTGGTGAAATTAGACGAGTTAACCGCATTGAACAACGTGTTTTAGAAGCACAAAAACTGGGCTTTAAGCGCGTATTAAT
ACCAAAACATAATATGTCAGGATGGACTGCGCCAGACGGAATTGAAGTCGTTGGTGTATCCACACTGGCTCAAGCGATTA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1FTB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

62.996

99.127

0.624
  radA Streptococcus pneumoniae Rx1

62.996

99.127

0.624
  radA Streptococcus pneumoniae D39

62.996

99.127

0.624
  radA Streptococcus pneumoniae R6

62.996

99.127

0.624
  radA Streptococcus pneumoniae TIGR4

62.996

99.127

0.624
  radA Streptococcus mitis SK321

62.996

99.127

0.624
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

99.782

0.616