Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K2W83_RS01785 Genome accession   NZ_CP080568
Coordinates   465726..467102 (+) Length   458 a.a.
NCBI ID   WP_053795188.1    Uniprot ID   A0A0R1FTB0
Organism   Apilactobacillus kunkeei strain DSMZ 12361     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 460726..472102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K2W83_RS01760 (K2W83_01760) - 461122..462075 (+) 954 WP_054449732.1 DMT family transporter -
  K2W83_RS01765 (K2W83_01765) - 462090..462758 (+) 669 WP_054449733.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  K2W83_RS01770 (K2W83_01770) - 462794..464134 (-) 1341 WP_054449734.1 C1 family peptidase -
  K2W83_RS01775 (K2W83_01775) rpiA 464239..464928 (-) 690 WP_053795186.1 ribose-5-phosphate isomerase RpiA -
  K2W83_RS01780 (K2W83_01780) - 465162..465698 (+) 537 WP_054449735.1 dUTP diphosphatase -
  K2W83_RS01785 (K2W83_01785) radA 465726..467102 (+) 1377 WP_053795188.1 DNA repair protein RadA Machinery gene
  K2W83_RS01790 (K2W83_01790) - 467124..468215 (+) 1092 WP_054449736.1 PIN domain-containing protein -
  K2W83_RS01795 (K2W83_01795) gltX 468325..469815 (+) 1491 WP_054449737.1 glutamate--tRNA ligase -
  K2W83_RS01800 (K2W83_01800) cysS 469937..471343 (+) 1407 WP_054449738.1 cysteine--tRNA ligase -
  K2W83_RS01805 (K2W83_01805) - 471344..471766 (+) 423 WP_155457554.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49736.00 Da        Isoelectric Point: 6.8370

>NTDB_id=594095 K2W83_RS01785 WP_053795188.1 465726..467102(+) (radA) [Apilactobacillus kunkeei strain DSMZ 12361]
MAKVKTQFVCEECGYISPKYLGHCPNCGKWNTFEEQTVQKETSSLKSTHRMDFNGQQAKPQLIKDVKFEKESRFETESQE
FNRVLGGGIVPGSLILIGGDPGIGKSTLLLQISGQLGAKKQRVLYVSGEESASQIKLRAERLSVNGSNMYLYPETDMGAI
KSAIDEIKPDAVVIDSVQTISEPEVDSAIGSVSQVRAITADLMSIAKTNGITIFVVGHVTKGGSIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLREVANPSEVFLEERLKDANGSAIVVSIEGTRPILVEIQALVTPSV
FGNAQRTATGIDRNRVAVLMAVLEKRAGLMLQNQDAFLKAAGGVKLNEPAIDLAVAISVASSYKNRGTDPSECYIGEIGL
TGEIRRVNRIEQRVLEAQKLGFKRVLIPKHNMSGWTAPDGIEVVGVSTLAQAIKIALN

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=594095 K2W83_RS01785 WP_053795188.1 465726..467102(+) (radA) [Apilactobacillus kunkeei strain DSMZ 12361]
GTGGCTAAAGTAAAGACCCAATTTGTTTGCGAAGAATGTGGATACATTTCACCCAAGTACTTGGGACATTGTCCTAACTG
TGGAAAATGGAATACATTTGAAGAACAAACCGTTCAAAAAGAAACATCGAGTTTGAAATCAACTCACCGAATGGATTTTA
ATGGTCAGCAAGCAAAACCACAACTAATCAAAGATGTTAAATTTGAAAAGGAATCACGTTTTGAAACTGAATCTCAAGAA
TTTAATCGTGTATTAGGTGGGGGAATTGTTCCGGGCTCATTAATTTTAATTGGTGGGGATCCTGGTATCGGGAAATCCAC
ACTGTTACTTCAAATTTCTGGACAATTAGGTGCTAAGAAACAACGTGTCTTGTATGTATCTGGGGAAGAAAGTGCCAGTC
AAATTAAGCTAAGAGCGGAACGCTTATCCGTGAATGGCTCCAACATGTATCTATATCCAGAAACCGATATGGGTGCTATC
AAGTCTGCCATTGATGAGATTAAACCGGATGCAGTCGTAATTGACTCCGTTCAAACTATTTCCGAACCAGAGGTTGATTC
CGCAATCGGTTCCGTATCACAGGTAAGAGCAATTACCGCAGATTTAATGTCCATTGCAAAGACCAATGGAATTACAATAT
TTGTGGTCGGCCACGTTACTAAGGGTGGATCAATTGCTGGACCTAAGACTTTGGAACACATGGTTGATACTGTTTTATAC
TTTGAAGGTGACATGCATCATTCCTACCGTATTTTAAGAGCTGTGAAGAACCGTTTTGGTTCAACCGACGAATTAGGGAT
TTTTGACATGCAAGAATCCGGATTACGAGAAGTTGCTAATCCATCAGAAGTCTTCTTGGAAGAACGTTTGAAGGACGCCA
ATGGTTCTGCAATCGTTGTCTCAATTGAAGGAACTAGACCAATCCTAGTCGAAATTCAGGCATTGGTAACACCATCCGTA
TTTGGGAATGCTCAAAGAACCGCTACCGGGATTGACCGTAACCGTGTAGCCGTTTTAATGGCGGTACTTGAAAAACGTGC
AGGACTAATGCTGCAAAACCAAGACGCCTTCTTGAAGGCGGCTGGTGGAGTTAAGTTAAACGAACCAGCAATTGATTTGG
CAGTAGCAATTAGTGTGGCATCGAGTTACAAGAACAGGGGAACCGACCCTAGTGAATGCTATATCGGTGAAATTGGTTTA
ACTGGTGAAATTAGACGAGTTAACCGCATTGAACAACGTGTTTTAGAAGCGCAAAAACTGGGCTTTAAGCGCGTATTAAT
ACCAAAACATAATATGTCAGGATGGACTGCGCCAGACGGAATTGAGGTCGTTGGTGTATCCACACTGGCTCAAGCGATTA
AAATCGCACTTAACTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1FTB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

62.996

99.127

0.624
  radA Streptococcus pneumoniae Rx1

62.996

99.127

0.624
  radA Streptococcus pneumoniae D39

62.996

99.127

0.624
  radA Streptococcus pneumoniae R6

62.996

99.127

0.624
  radA Streptococcus pneumoniae TIGR4

62.996

99.127

0.624
  radA Streptococcus mitis SK321

62.996

99.127

0.624
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

99.782

0.616