Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JMO07_RS10005 Genome accession   NZ_CP080564
Coordinates   2042091..2042807 (+) Length   238 a.a.
NCBI ID   WP_031889902.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL16278     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2037091..2047807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO07_RS09975 (JMO07_002000) - 2037307..2037933 (+) 627 WP_000522384.1 nitroreductase family protein -
  JMO07_RS09980 (JMO07_002001) - 2038294..2039079 (+) 786 WP_000867942.1 carbon-nitrogen family hydrolase -
  JMO07_RS13700 hld 2039679..2039759 (-) 81 WP_000046022.1 delta-hemolysin -
  JMO07_RS09990 (JMO07_002003) agrB 2040049..2040618 (+) 570 WP_001105707.1 accessory gene regulator AgrB -
  JMO07_RS09995 (JMO07_002004) agrD 2040615..2040755 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  JMO07_RS10000 (JMO07_002005) agrC 2040780..2042072 (+) 1293 WP_001789596.1 quorum-sensing sensor histidine kinase AgrC -
  JMO07_RS10005 (JMO07_002006) agrA 2042091..2042807 (+) 717 WP_031889902.1 quorum-sensing response regulator AgrA Regulator
  JMO07_RS10010 (JMO07_002007) - 2042879..2042988 (+) 110 Protein_1951 hypothetical protein -
  JMO07_RS10015 (JMO07_002008) - 2043176..2044135 (-) 960 WP_001253305.1 carbohydrate kinase -
  JMO07_RS10020 (JMO07_002009) - 2044132..2045616 (-) 1485 WP_000141430.1 sucrose-6-phosphate hydrolase -
  JMO07_RS10025 (JMO07_002010) - 2045765..2046715 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27932.93 Da        Isoelectric Point: 6.0927

>NTDB_id=594041 JMO07_RS10005 WP_031889902.1 2042091..2042807(+) (agrA) [Staphylococcus aureus strain HL16278]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNNFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=594041 JMO07_RS10005 WP_031889902.1 2042091..2042807(+) (agrA) [Staphylococcus aureus strain HL16278]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGCGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAACTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996