Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M3O69_RS09140 Genome accession   NZ_CP097213
Coordinates   1905317..1906744 (-) Length   475 a.a.
NCBI ID   WP_000980628.1    Uniprot ID   -
Organism   Escherichia coli strain BE311     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1900317..1911744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3O69_RS09110 (M3O69_09100) yeeZ 1900372..1901196 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  M3O69_RS09115 (M3O69_09105) yeeY 1901242..1902171 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  M3O69_RS09120 (M3O69_09110) yoeI 1902386..1902448 (+) 63 WP_010723108.1 membrane protein YoeI -
  M3O69_RS09125 (M3O69_09115) plaP 1902438..1903796 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M3O69_RS09130 (M3O69_09120) tsuA 1903975..1905033 (+) 1059 WP_000492316.1 thiosulfate utilization transporter TsuA/YeeE -
  M3O69_RS09135 (M3O69_09125) tsuB 1905047..1905274 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M3O69_RS09140 (M3O69_09130) sbcB 1905317..1906744 (-) 1428 WP_000980628.1 exodeoxyribonuclease I Machinery gene
  M3O69_RS09145 (M3O69_09135) dacD 1906953..1908119 (+) 1167 WP_001375226.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  M3O69_RS09150 (M3O69_09140) sbmC 1908238..1908711 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  M3O69_RS09155 (M3O69_09145) yeeA 1908910..1909968 (+) 1059 WP_001200891.1 FUSC family protein -
  M3O69_RS09160 (M3O69_09150) tmaR 1910140..1910469 (+) 330 WP_000450409.1 DUF496 family protein -
  M3O69_RS09165 (M3O69_09155) - 1910570..1910752 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  M3O69_RS09170 (M3O69_09160) - 1910824..1910952 (+) 129 Protein_1800 transposase domain-containing protein -
  M3O69_RS09175 (M3O69_09165) - 1911241..1911333 (-) 93 Protein_1801 hypothetical protein -
  M3O69_RS09180 (M3O69_09170) yeeW 1911367..1911561 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4740

>NTDB_id=594017 M3O69_RS09140 WP_000980628.1 1905317..1906744(-) (sbcB) [Escherichia coli strain BE311]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFTARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=594017 M3O69_RS09140 WP_000980628.1 1905317..1906744(-) (sbcB) [Escherichia coli strain BE311]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTACCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
TGATGACGAAGTCACACGCAATATCTTCTATCGCAACTTTTATGATCCTTATGCCTGGAGCTGGCAGCATGACAACTCAC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGCAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCAGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579