Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   JMO08_RS08515 Genome accession   NZ_CP080562
Coordinates   1725976..1726950 (-) Length   324 a.a.
NCBI ID   WP_115390956.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL21008     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720976..1731950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO08_RS08475 (JMO08_001695) gcvT 1721477..1722568 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JMO08_RS08480 (JMO08_001696) - 1722727..1723251 (-) 525 WP_001015120.1 shikimate kinase -
  JMO08_RS08485 (JMO08_001697) - 1723241..1723387 (-) 147 WP_001792109.1 hypothetical protein -
  JMO08_RS08490 (JMO08_001698) comGF 1723484..1723981 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  JMO08_RS08495 (JMO08_001699) comGE 1723899..1724198 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  JMO08_RS08500 (JMO08_001700) comGD 1724185..1724631 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JMO08_RS08505 (JMO08_001701) comGC 1724609..1724920 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JMO08_RS08510 (JMO08_001702) comGB 1724934..1726004 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  JMO08_RS08515 (JMO08_001703) comGA 1725976..1726950 (-) 975 WP_115390956.1 competence type IV pilus ATPase ComGA Machinery gene
  JMO08_RS08520 (JMO08_001704) - 1727002..1727625 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JMO08_RS08525 (JMO08_001705) - 1727622..1727951 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JMO08_RS08530 (JMO08_001706) - 1727951..1728937 (-) 987 WP_000161311.1 ROK family glucokinase -
  JMO08_RS08535 (JMO08_001707) - 1728934..1729137 (-) 204 WP_000087558.1 YqgQ family protein -
  JMO08_RS08540 (JMO08_001708) - 1729118..1730581 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -
  JMO08_RS08545 (JMO08_001709) - 1730593..1731132 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  JMO08_RS08550 (JMO08_001710) rpmG 1731341..1731490 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36884.96 Da        Isoelectric Point: 8.8516

>NTDB_id=593985 JMO08_RS08515 WP_115390956.1 1725976..1726950(-) (comGA) [Staphylococcus aureus strain HL21008]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKTLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=593985 JMO08_RS08515 WP_115390956.1 1725976..1726950(-) (comGA) [Staphylococcus aureus strain HL21008]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGCGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGACCTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997