Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M4R69_RS03005 Genome accession   NZ_CP097198
Coordinates   659932..661356 (-) Length   474 a.a.
NCBI ID   WP_088845946.1    Uniprot ID   -
Organism   Escherichia coli strain 2-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 654932..666356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R69_RS02975 (M4R69_02975) yeeZ 654987..655811 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  M4R69_RS02980 (M4R69_02980) yeeY 655857..656786 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  M4R69_RS02985 (M4R69_02985) yoeI 657001..657063 (+) 63 WP_010723108.1 membrane protein YoeI -
  M4R69_RS02990 (M4R69_02990) plaP 657053..658411 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M4R69_RS02995 (M4R69_02995) tsuA 658590..659648 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  M4R69_RS03000 (M4R69_03000) tsuB 659662..659889 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M4R69_RS03005 (M4R69_03005) sbcB 659932..661356 (-) 1425 WP_088845946.1 exodeoxyribonuclease I Machinery gene
  M4R69_RS03010 (M4R69_03010) - 661538..662716 (+) 1179 WP_025404398.1 tyrosine-type recombinase/integrase -
  M4R69_RS03015 (M4R69_03015) - 662697..662888 (-) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  M4R69_RS03020 (M4R69_03020) - 662966..663310 (-) 345 WP_032084204.1 hypothetical protein -
  M4R69_RS03025 (M4R69_03025) - 663411..663590 (-) 180 WP_032169734.1 Eag protein -
  M4R69_RS03030 (M4R69_03030) - 663652..664125 (+) 474 Protein_595 tail needle knob protein -
  M4R69_RS03035 (M4R69_03035) - 664125..664580 (+) 456 WP_001296868.1 DUF2824 family protein -
  M4R69_RS03040 (M4R69_03040) - 664583..665275 (+) 693 WP_000964864.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54381.63 Da        Isoelectric Point: 5.4720

>NTDB_id=593908 M4R69_RS03005 WP_088845946.1 659932..661356(-) (sbcB) [Escherichia coli strain 2-1]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=593908 M4R69_RS03005 WP_088845946.1 659932..661356(-) (sbcB) [Escherichia coli strain 2-1]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584