Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M4R35_RS16630 Genome accession   NZ_CP097181
Coordinates   3420332..3420937 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SH21PTE31     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3415332..3425937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R35_RS16610 aes 3415369..3416328 (+) 960 WP_000801813.1 acetyl esterase -
  M4R35_RS16615 hemH 3416325..3417287 (-) 963 WP_001250103.1 ferrochelatase -
  M4R35_RS16620 adk 3417523..3418167 (-) 645 WP_001220233.1 adenylate kinase -
  M4R35_RS16625 htpG 3418348..3420222 (-) 1875 WP_053286022.1 molecular chaperone HtpG -
  M4R35_RS16630 recR 3420332..3420937 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  M4R35_RS16635 ybaB 3420937..3421266 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  M4R35_RS16640 dnaX 3421319..3423250 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  M4R35_RS16645 apt 3423379..3423930 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  M4R35_RS16650 ybaN 3424083..3424460 (-) 378 WP_001188905.1 DUF454 family protein -
  M4R35_RS16655 priC 3424530..3425057 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  M4R35_RS16660 rsmS 3425071..3425232 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=593875 M4R35_RS16630 WP_001195025.1 3420332..3420937(-) (recR) [Escherichia coli strain SH21PTE31]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=593875 M4R35_RS16630 WP_001195025.1 3420332..3420937(-) (recR) [Escherichia coli strain SH21PTE31]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443