Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M4R35_RS08845 Genome accession   NZ_CP097181
Coordinates   1847297..1848721 (-) Length   474 a.a.
NCBI ID   WP_085438546.1    Uniprot ID   -
Organism   Escherichia coli strain SH21PTE31     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1842297..1853721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4R35_RS08815 yeeZ 1842352..1843176 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  M4R35_RS08820 yeeY 1843222..1844151 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  M4R35_RS08825 yoeI 1844366..1844428 (+) 63 WP_010723108.1 membrane protein YoeI -
  M4R35_RS08830 plaP 1844418..1845776 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M4R35_RS08835 tsuA 1845955..1847013 (+) 1059 WP_064670362.1 thiosulfate utilization transporter TsuA/YeeE -
  M4R35_RS08840 tsuB 1847027..1847254 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M4R35_RS08845 sbcB 1847297..1848721 (-) 1425 WP_085438546.1 exodeoxyribonuclease I Machinery gene
  M4R35_RS08850 - 1848903..1850081 (+) 1179 WP_048266533.1 site-specific integrase -
  M4R35_RS08855 - 1850062..1850253 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  M4R35_RS08860 - 1850593..1850760 (-) 168 WP_000545720.1 hypothetical protein -
  M4R35_RS08865 - 1850861..1851163 (-) 303 WP_001309625.1 Lar family restriction alleviation protein -
  M4R35_RS08870 - 1851160..1851657 (-) 498 WP_249398383.1 DUF550 domain-containing protein -
  M4R35_RS08875 - 1851631..1851756 (-) 126 Protein_1744 DUF550 domain-containing protein -
  M4R35_RS08880 - 1851759..1851950 (-) 192 WP_212480433.1 hypothetical protein -
  M4R35_RS08885 - 1851952..1852404 (-) 453 Protein_1746 ead/Ea22-like family protein -
  M4R35_RS08890 - 1852435..1852644 (-) 210 Protein_1747 ead/Ea22-like family protein -
  M4R35_RS08895 - 1852646..1852945 (-) 300 WP_000118152.1 hypothetical protein -
  M4R35_RS08900 - 1852942..1853109 (-) 168 WP_130562315.1 DUF2737 family protein -
  M4R35_RS08905 - 1853120..1853413 (-) 294 WP_001111335.1 phage anti-RecBCD protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54398.72 Da        Isoelectric Point: 5.4700

>NTDB_id=593854 M4R35_RS08845 WP_085438546.1 1847297..1848721(-) (sbcB) [Escherichia coli strain SH21PTE31]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNLIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKMRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=593854 M4R35_RS08845 WP_085438546.1 1847297..1848721(-) (sbcB) [Escherichia coli strain SH21PTE31]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATCTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCCGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAATGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584