Detailed information NTG0593841

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M4R35_RS05130
• Genome accession: NZ_CP097181
• Coordinates: 1058368..1059360 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SH21PTE31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1053368..1064360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M4R35_RS05100	ispD	1053429..1054139 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
M4R35_RS05105	ispF	1054139..1054618 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M4R35_RS05110	truD	1054615..1055664 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
M4R35_RS05115	surE	1055645..1056406 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
M4R35_RS05120	pcm	1056400..1057026 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
M4R35_RS05125	nlpD	1057211..1058305 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
M4R35_RS05130	rpoS	1058368..1059360 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
M4R35_RS05135	ygbN	1059454..1060818 (-)	1365	WP_000104441.1	GntP family transporter	-
M4R35_RS05140	ygbM	1060907..1061683 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
M4R35_RS05145	ygbL	1061688..1062326 (-)	639	WP_001278994.1	aldolase	-
M4R35_RS05150	otnK	1062323..1063585 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=593841 M4R35_RS05130 WP_000081550.1 1058368..1059360(+) (rpoS) [Escherichia coli strain SH21PTE31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=593841 M4R35_RS05130 WP_000081550.1 1058368..1059360(+) (rpoS) [Escherichia coli strain SH21PTE31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715