Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M3M51_RS06535 Genome accession   NZ_CP097170
Coordinates   1352167..1352682 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain AR13438     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347167..1357682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M51_RS06495 (M3M51_06485) csrA 1348185..1348370 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  M3M51_RS06520 (M3M51_06510) yqaB 1349397..1349963 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  M3M51_RS06525 (M3M51_06515) yqaA 1349960..1350388 (+) 429 WP_001287454.1 YqaA family protein -
  M3M51_RS06530 (M3M51_06520) gshA 1350461..1352017 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  M3M51_RS06535 (M3M51_06525) luxS 1352167..1352682 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  M3M51_RS06540 (M3M51_06530) emrB 1352746..1354284 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  M3M51_RS06545 (M3M51_06535) emrA 1354301..1355473 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  M3M51_RS06550 (M3M51_06540) emrR 1355600..1356130 (-) 531 WP_072693088.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  M3M51_RS06555 (M3M51_06545) ygaH 1356221..1356556 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  M3M51_RS06560 (M3M51_06550) ygaZ 1356546..1357283 (-) 738 WP_000445648.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=593768 M3M51_RS06535 WP_001130208.1 1352167..1352682(+) (luxS) [Escherichia coli strain AR13438]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=593768 M3M51_RS06535 WP_001130208.1 1352167..1352682(+) (luxS) [Escherichia coli strain AR13438]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737