Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JMO13_RS07870 Genome accession   NZ_CP080551
Coordinates   1638593..1639279 (-) Length   228 a.a.
NCBI ID   WP_220359200.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL18840     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633593..1644279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO13_RS07850 (JMO13_001570) rpsT 1634507..1634758 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  JMO13_RS07855 (JMO13_001571) holA 1634803..1635777 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  JMO13_RS07860 (JMO13_001572) comEC 1635834..1638035 (-) 2202 WP_020978202.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JMO13_RS07865 (JMO13_001573) - 1638040..1638501 (-) 462 WP_000439693.1 ComE operon protein 2 -
  JMO13_RS07870 (JMO13_001574) comEA 1638593..1639279 (-) 687 WP_220359200.1 ComEA family DNA-binding protein Machinery gene
  JMO13_RS07875 (JMO13_001575) - 1639319..1640035 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  JMO13_RS07880 (JMO13_001576) rsfS 1640038..1640391 (-) 354 WP_001088022.1 ribosome silencing factor -
  JMO13_RS07885 (JMO13_001577) yqeK 1640392..1640976 (-) 585 WP_001019323.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JMO13_RS07890 (JMO13_001578) nadD 1640966..1641535 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JMO13_RS07895 (JMO13_001579) yhbY 1641538..1641828 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  JMO13_RS07900 (JMO13_001580) aroE 1641832..1642638 (-) 807 WP_000666757.1 shikimate dehydrogenase -
  JMO13_RS07905 (JMO13_001581) yqeH 1642652..1643752 (-) 1101 WP_001280138.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25877.56 Da        Isoelectric Point: 9.5191

>NTDB_id=593768 JMO13_RS07870 WP_220359200.1 1638593..1639279(-) (comEA) [Staphylococcus aureus strain HL18840]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSEKSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=593768 JMO13_RS07870 WP_220359200.1 1638593..1639279(-) (comEA) [Staphylococcus aureus strain HL18840]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAAAAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

96.916

99.561

0.965