Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   M2M89_RS20485 Genome accession   NZ_CP097130
Coordinates   4001839..4002633 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain S16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3996839..4007633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS20460 rocD 3997413..3998618 (-) 1206 WP_047183487.1 ornithine aminotransferase -
  M2M89_RS20465 rocR 3998859..4000244 (+) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  M2M89_RS20470 - 4000226..4000384 (-) 159 Protein_3990 ATP-binding protein -
  M2M89_RS20475 - 4000406..4000535 (-) 130 Protein_3991 hypothetical protein -
  M2M89_RS20480 htrA 4000555..4001757 (-) 1203 WP_041850281.1 serine protease HtrC Regulator
  M2M89_RS20485 vicX 4001839..4002633 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  M2M89_RS20490 walI 4002655..4003497 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  M2M89_RS20495 walH 4003484..4004851 (-) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  M2M89_RS20500 walK 4004841..4006676 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  M2M89_RS20505 walR 4006684..4007391 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=593738 M2M89_RS20485 WP_003226939.1 4001839..4002633(-) (vicX) [Bacillus subtilis strain S16]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=593738 M2M89_RS20485 WP_003226939.1 4001839..4002633(-) (vicX) [Bacillus subtilis strain S16]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53