Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   M2M89_RS20110 Genome accession   NZ_CP097130
Coordinates   3926813..3927502 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain S16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3921813..3932502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS20090 yxeA 3922718..3923065 (-) 348 WP_021481023.1 YxeA family protein -
  M2M89_RS20095 yxdM 3923079..3924947 (-) 1869 WP_128442014.1 ABC transporter permease YxdM -
  M2M89_RS20100 yxdL 3924922..3925695 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  M2M89_RS20105 yxdK 3925839..3926816 (-) 978 WP_024572300.1 two-component system sensor histidine kinase YxdK -
  M2M89_RS20110 braR 3926813..3927502 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  M2M89_RS20115 iolJ 3927610..3928482 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  M2M89_RS20120 iolI 3928503..3929339 (-) 837 WP_128442016.1 2-keto-myo-inositol isomerase -
  M2M89_RS20125 iolH 3929425..3930294 (-) 870 WP_128442017.1 sugar phosphate isomerase/epimerase -
  M2M89_RS20130 iolG 3930316..3931350 (-) 1035 WP_128442019.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=593735 M2M89_RS20110 WP_003243527.1 3926813..3927502(-) (braR) [Bacillus subtilis strain S16]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=593735 M2M89_RS20110 WP_003243527.1 3926813..3927502(-) (braR) [Bacillus subtilis strain S16]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406