Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KZ483_RS19235 Genome accession   NZ_CP080545
Coordinates   4193120..4194820 (-) Length   566 a.a.
NCBI ID   WP_220349196.1    Uniprot ID   -
Organism   Paenibacillus sp. sptzw28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4188120..4199820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KZ483_RS19210 (KZ483_19210) clpP 4188535..4189143 (-) 609 WP_220349192.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  KZ483_RS19215 (KZ483_19215) - 4189169..4189909 (-) 741 WP_220349193.1 RNA polymerase sigma factor -
  KZ483_RS19220 (KZ483_19220) - 4190004..4190480 (-) 477 WP_220349194.1 DUF6884 domain-containing protein -
  KZ483_RS19225 (KZ483_19225) spo0A 4190610..4191428 (-) 819 WP_220349195.1 sporulation transcription factor Spo0A -
  KZ483_RS19230 (KZ483_19230) spoIVB 4191672..4192997 (-) 1326 WP_220353543.1 SpoIVB peptidase -
  KZ483_RS19235 (KZ483_19235) recN 4193120..4194820 (-) 1701 WP_220349196.1 DNA repair protein RecN Machinery gene
  KZ483_RS19240 (KZ483_19240) ahrC 4194884..4195333 (-) 450 WP_220349197.1 transcriptional regulator AhrC/ArgR -
  KZ483_RS19245 (KZ483_19245) - 4195354..4195812 (-) 459 WP_220349198.1 hypothetical protein -
  KZ483_RS19250 (KZ483_19250) - 4196034..4196873 (-) 840 WP_220349199.1 TlyA family RNA methyltransferase -
  KZ483_RS19255 (KZ483_19255) dxs 4196891..4198789 (-) 1899 WP_220349200.1 1-deoxy-D-xylulose-5-phosphate synthase -
  KZ483_RS19260 (KZ483_19260) - 4198895..4199806 (-) 912 WP_220349201.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64163.05 Da        Isoelectric Point: 5.7268

>NTDB_id=593689 KZ483_RS19235 WP_220349196.1 4193120..4194820(-) (recN) [Paenibacillus sp. sptzw28]
MLRELSIRNLAVIESVRVRFHEGFHVLTGETGAGKSILIDALSLVVGGRGSSDMVRYGCDKAEIEAMFELPSIHPVWRIL
EDFGIHASPDECLVIRRELSSQGKSVSRVNGHIVTMTMLREAGECLVNIHGQHEHQSLLRTEKHLEWLDSYAGEKVTRML
NQYRTAFQQYEKVRAQLKELEDTSRQNMQMLDLYRFQIEEIISAHLKPGEDESLSEEKQKLMYAVKRKDSASEAYTLLYG
GKGLDTISRAITRIEDIRDYDQALVGPMLEQLQSAFYQLEDAVFQLRDYRDGIESDPERLTIIDDRLDLIHSLKRKYGET
IPDILTYLGNIQSEADKIENRDEHIGRLRDELHRLQAEATRLGKSLSQLRRDAGDRLAIAIESELRQLQMERTTFRVELG
QQSDGDSYRLLAHGIDEAAFLIAPNPGEPLKPLSKIASGGEMSRIMLALKTIFASIDQVPVLIFDEVDTGVSGRAAQAIA
EKLSRLSQQCQVFSITHLPQVACMADHHYEIRKQIVSERTSTMVTELTQGPRIEELARMLGGVEVTEKTRHHAQEMLDLA
YKQKGA

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=593689 KZ483_RS19235 WP_220349196.1 4193120..4194820(-) (recN) [Paenibacillus sp. sptzw28]
ATGCTTCGCGAGTTGTCGATACGCAATTTGGCTGTTATCGAATCTGTAAGAGTACGGTTTCACGAAGGATTTCATGTATT
AACCGGTGAAACCGGTGCAGGCAAATCCATATTGATTGATGCGCTTAGTCTGGTTGTGGGCGGGAGAGGATCTTCCGACA
TGGTTCGCTATGGCTGCGATAAAGCCGAAATTGAAGCGATGTTCGAACTGCCTTCGATTCATCCGGTCTGGAGAATACTG
GAAGACTTTGGAATACATGCTTCGCCTGATGAATGTCTGGTCATACGACGCGAACTTTCCTCTCAAGGGAAAAGCGTGAG
CAGAGTGAACGGGCACATCGTTACGATGACAATGCTTCGCGAAGCGGGCGAGTGTCTTGTGAATATACATGGACAGCACG
AGCACCAGTCCCTGCTCCGTACTGAAAAACATTTGGAATGGCTCGACTCATACGCTGGTGAGAAAGTGACCAGAATGCTG
AATCAATATCGCACTGCATTCCAGCAGTATGAGAAGGTGCGGGCGCAGCTGAAGGAGCTTGAGGATACATCCAGGCAAAA
TATGCAGATGCTTGATCTTTATCGATTCCAGATCGAGGAAATTATATCCGCTCACCTGAAGCCGGGTGAAGATGAATCGC
TTTCCGAAGAGAAGCAGAAACTAATGTATGCGGTGAAACGTAAGGATTCGGCGTCGGAAGCCTACACGCTTCTGTATGGC
GGCAAAGGATTGGATACGATCAGCCGTGCCATAACCCGGATTGAAGACATTCGCGATTACGACCAAGCACTTGTCGGCCC
AATGCTGGAACAGCTTCAGTCTGCGTTTTATCAGCTGGAGGATGCCGTATTTCAATTAAGGGATTACCGGGACGGTATTG
AATCGGATCCGGAGCGGCTAACGATCATTGATGACCGGCTTGATTTAATACACAGCCTCAAGCGCAAATACGGGGAAACC
ATCCCTGATATTCTAACCTATTTGGGCAACATTCAGTCGGAAGCCGATAAAATTGAAAACCGCGACGAGCATATCGGAAG
GCTGAGGGATGAACTTCACCGTCTTCAGGCTGAAGCCACAAGGCTGGGGAAATCATTGTCTCAGCTTCGCCGGGATGCAG
GAGACAGGCTTGCCATCGCAATCGAGAGCGAATTGCGGCAGCTGCAGATGGAACGCACGACCTTCCGCGTAGAGCTTGGG
CAGCAGTCCGACGGGGACTCTTACCGGCTCCTTGCGCATGGAATTGATGAAGCAGCGTTTCTTATTGCTCCCAATCCTGG
AGAGCCGCTGAAACCTTTGAGTAAAATCGCCTCCGGTGGTGAAATGTCCCGCATCATGCTGGCGCTGAAGACGATATTCG
CTTCAATCGACCAGGTGCCCGTACTTATTTTCGACGAAGTTGATACCGGGGTGAGCGGACGGGCCGCTCAAGCCATTGCG
GAGAAACTGTCAAGATTATCACAGCAATGCCAGGTATTCTCGATAACGCATTTACCGCAGGTTGCCTGTATGGCGGATCA
TCATTATGAAATCCGGAAGCAGATTGTCTCCGAAAGAACGTCCACAATGGTGACTGAATTGACACAGGGGCCGCGAATTG
AAGAACTTGCCAGAATGCTTGGCGGTGTCGAGGTAACGGAGAAGACCCGGCATCACGCACAAGAAATGCTTGACTTGGCA
TATAAACAAAAGGGGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.161

100

0.486