Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   M2M89_RS11315 Genome accession   NZ_CP097130
Coordinates   2246857..2248347 (-) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2241857..2253347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS11285 gudB 2242001..2243275 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  M2M89_RS11290 mecB 2243431..2244015 (-) 585 WP_003230533.1 genetic competence negative regulator -
  M2M89_RS11295 ypbG 2244174..2244953 (-) 780 WP_003230532.1 metallophosphoesterase -
  M2M89_RS11300 ypbF 2245040..2245483 (-) 444 WP_003230531.1 YpbF family protein -
  M2M89_RS11305 ypbE 2245546..2246277 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  M2M89_RS11310 ypbD 2246228..2246830 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  M2M89_RS11315 recS 2246857..2248347 (-) 1491 WP_015251799.1 ATP-dependent DNA helicase RecQ Machinery gene
  M2M89_RS11320 gmmB 2248340..2249398 (-) 1059 WP_128442083.1 helix-turn-helix domain-containing protein -
  M2M89_RS11325 fer 2249664..2249912 (+) 249 WP_003225461.1 ferredoxin -
  M2M89_RS11330 fmnP 2249952..2250524 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  M2M89_RS11335 serA 2251021..2252598 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=593673 M2M89_RS11315 WP_015251799.1 2246857..2248347(-) (recS) [Bacillus subtilis strain S16]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=593673 M2M89_RS11315 WP_015251799.1 2246857..2248347(-) (recS) [Bacillus subtilis strain S16]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTAGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAGATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998