Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K1552_RS14505 Genome accession   NZ_CP080539
Coordinates   3025986..3026600 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain DY2019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020986..3031600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1552_RS14490 (K1552_14490) helD 3021210..3023264 (-) 2055 WP_019076416.1 DNA helicase IV -
  K1552_RS14495 (K1552_14495) - 3023390..3023836 (+) 447 WP_016152485.1 YccF domain-containing protein -
  K1552_RS14500 (K1552_14500) yccS 3023855..3026008 (+) 2154 WP_016152484.1 YccS family putative transporter -
  K1552_RS14505 (K1552_14505) sxy/tfoX 3025986..3026600 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  K1552_RS14510 (K1552_14510) sulA 3026817..3027326 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  K1552_RS14515 (K1552_14515) ompA 3027684..3028742 (+) 1059 WP_046275731.1 porin OmpA -
  K1552_RS14520 (K1552_14520) matP 3028840..3029292 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  K1552_RS14525 (K1552_14525) - 3029478..3031238 (+) 1761 WP_047414152.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=593647 K1552_RS14505 WP_016152483.1 3025986..3026600(-) (sxy/tfoX) [Citrobacter braakii strain DY2019]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=593647 K1552_RS14505 WP_016152483.1 3025986..3026600(-) (sxy/tfoX) [Citrobacter braakii strain DY2019]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAACAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTCGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGCGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681