Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K1515_RS32335 Genome accession   NZ_CP080538
Coordinates   8018848..8020215 (+) Length   455 a.a.
NCBI ID   WP_011551373.1    Uniprot ID   Q1DCW0
Organism   Myxococcus xanthus DZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8013848..8025215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1515_RS32310 (K1515_32240) - 8014945..8015223 (-) 279 WP_026114139.1 hypothetical protein -
  K1515_RS32315 (K1515_32245) bioD 8015356..8016039 (-) 684 WP_011551376.1 dethiobiotin synthase -
  K1515_RS32320 (K1515_32250) bioF 8016032..8017207 (-) 1176 WP_011551375.1 8-amino-7-oxononanoate synthase -
  K1515_RS32325 (K1515_32255) bioB 8017215..8018255 (-) 1041 WP_011551374.1 biotin synthase BioB -
  K1515_RS32330 (K1515_32260) - 8018396..8018665 (-) 270 WP_020478235.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  K1515_RS32335 (K1515_32265) radA 8018848..8020215 (+) 1368 WP_011551373.1 DNA repair protein RadA Machinery gene
  K1515_RS32340 (K1515_32270) - 8020302..8021642 (+) 1341 WP_026114140.1 AHH domain-containing protein -
  K1515_RS32345 (K1515_32275) - 8021658..8022227 (+) 570 WP_011551371.1 DUF1629 domain-containing protein -
  K1515_RS32350 (K1515_32280) - 8022370..8023201 (+) 832 Protein_6420 glycosyl hydrolase family 18 protein -
  K1515_RS32355 (K1515_32285) - 8023263..8023814 (-) 552 WP_011551369.1 dihydrofolate reductase family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48344.80 Da        Isoelectric Point: 7.6453

>NTDB_id=593632 K1515_RS32335 WP_011551373.1 8018848..8020215(+) (radA) [Myxococcus xanthus DZ2]
MAKAKTHYTCQACGYKTAKWLGKCPDCGAWSSLLEETDPKADERRPAWGASGGSARPMLLKEVSGETETRRRTGIAEFDR
VLGGGVVSGSIVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGEAIHLFAETDAERVLTAT
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAYAKRTGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGAGLVEVSDPSALFLSERPVGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLTEPACDLAVCAALVSSLQNRPLDPKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVMPAGSARRLEDAGPKMKIVGVETLGDALVAMFD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=593632 K1515_RS32335 WP_011551373.1 8018848..8020215(+) (radA) [Myxococcus xanthus DZ2]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCGTGTGGATACAAAACGGCGAAGTGGCTCGGAAAGTGTCCGGACTG
TGGCGCGTGGAGTTCCCTGCTGGAGGAGACGGACCCGAAGGCGGATGAACGACGTCCGGCCTGGGGTGCCTCGGGCGGTT
CGGCGCGGCCCATGCTGCTCAAGGAAGTGAGCGGCGAGACGGAGACGCGCCGGCGCACGGGCATCGCCGAATTCGACCGC
GTGCTGGGCGGCGGCGTGGTGAGTGGCTCCATCGTGCTGCTGGGTGGCGACCCGGGCATCGGCAAGTCCACACTGCTGCT
GGCGGCGTTGGACAGGTTGGCGCGCCACGGACCGGTGCTCTACGTCTCCGGTGAAGAGAGCCTGCGACAGACGAAGATGC
GCGCCGAGCGGCTCCGGGTGGAGGGAGAGGCCATCCACCTGTTCGCAGAGACGGACGCGGAGCGGGTGCTGACGGCGACG
GAGGCGTTGAAGCCCCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCCGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCCTACGCGAAGCGCACGGGGGTGCCCACGTTCCTGGTAGGCC
ACGTGACGAAGGAAGGTTCCATCGCGGGCCCGCGCGTGTTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGTGAG
CGGGGCCACCCGTTCCGAATCCTGCGCGCGCACAAGAACCGCTTCGGCTCCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGTCCGACCCCTCCGCCCTCTTCCTGTCGGAGCGGCCGGTGGGCAAGTCTGGCAGCGTGG
TGACGAGCACGCTGAACGGTACGCGCCCACTGCTGGTGGAGGTGCAAGCGCTGGTGGCGCCCACGGGCTACGGCACCGCG
CGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAAGAGATTCCGCT
GGTGGGCTGTGACTTGTTCGTCAACGTGGCGGGCGGCATGCAGCTCACCGAGCCCGCGTGTGACCTCGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTCCAGAATCGTCCGTTGGATCCGAAGACGCTGGTGCTCGGAGAAGTGGGCCTCGCGGGAGAGGTG
CGAGCGGTGGGTCAGGTGGAGCCCCGACTGGCGGAGGCCGCGAAGATGGGCTTCCAGCGCGTGGTGATGCCCGCGGGCAG
CGCGCGGCGCCTGGAGGATGCAGGCCCGAAGATGAAGATCGTCGGCGTGGAGACGCTCGGCGACGCGCTCGTCGCGATGT
TCGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(80-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1DCW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.187

100

0.532
  radA Streptococcus mitis SK321

51.974

100

0.521
  radA Streptococcus mitis NCTC 12261

51.868

100

0.519
  radA Streptococcus pneumoniae TIGR4

51.648

100

0.516
  radA Streptococcus pneumoniae Rx1

51.648

100

0.516
  radA Streptococcus pneumoniae D39

51.648

100

0.516
  radA Streptococcus pneumoniae R6

51.648

100

0.516