Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   M2M89_RS02410 Genome accession   NZ_CP097130
Coordinates   478742..479176 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain S16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473742..484176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS02380 ydaD 474391..475251 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  M2M89_RS02385 lyxE 475267..475770 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  M2M89_RS02390 ydaF 475856..476407 (+) 552 WP_003234398.1 GNAT family protein -
  M2M89_RS02395 ydaG 476485..476907 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  M2M89_RS02400 amj 477413..478222 (+) 810 WP_003234394.1 lipid II flippase Amj -
  M2M89_RS02405 ydzA 478267..478557 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  M2M89_RS02410 lrpC 478742..479176 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  M2M89_RS02415 topB 479241..481424 (+) 2184 WP_072173994.1 DNA topoisomerase III -
  M2M89_RS02420 epsJ 481627..482715 (+) 1089 WP_046664274.1 lipoprotein YdaJ -
  M2M89_RS02425 epsK 482696..483547 (+) 852 WP_249385594.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=593612 M2M89_RS02410 WP_003246585.1 478742..479176(+) (lrpC) [Bacillus subtilis strain S16]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=593612 M2M89_RS02410 WP_003246585.1 478742..479176(+) (lrpC) [Bacillus subtilis strain S16]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
TAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1