Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J56_RS03520 Genome accession   NZ_AP018768
Coordinates   695815..696429 (+) Length   204 a.a.
NCBI ID   WP_011271983.1    Uniprot ID   Q4QNM5
Organism   Haemophilus influenzae strain CHBN-II-5 isolate 13H40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 690815..701429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J56_RS03495 (CHBNII5_06620) - 691383..691901 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J56_RS03500 (CHBNII5_06630) aspS 692120..693886 (+) 1767 WP_011271986.1 aspartate--tRNA ligase -
  K6J56_RS03505 (CHBNII5_06640) nudB 693908..694381 (+) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  K6J56_RS03510 (CHBNII5_06650) - 694393..695133 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J56_RS03515 (CHBNII5_06660) ruvC 695180..695752 (+) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  K6J56_RS03520 (CHBNII5_06670) ruvA 695815..696429 (+) 615 WP_011271983.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J56_RS03525 (CHBNII5_06680) ruvB 696437..697444 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J56_RS03530 (CHBNII5_06690) - 697496..697783 (-) 288 WP_011271982.1 DUF5339 domain-containing protein -
  K6J56_RS03535 (CHBNII5_06700) xerD 697956..698849 (-) 894 WP_011271981.1 site-specific tyrosine recombinase XerD -
  K6J56_RS03540 (CHBNII5_06710) - 698880..700046 (-) 1167 WP_011271980.1 3-phenylpropionate MFS transporter -
  K6J56_RS03545 (CHBNII5_06720) proC 700046..700861 (-) 816 WP_011271979.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22561.30 Da        Isoelectric Point: 6.5030

>NTDB_id=59357 K6J56_RS03520 WP_011271983.1 695815..696429(+) (ruvA) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGIKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59357 K6J56_RS03520 WP_011271983.1 695815..696429(+) (ruvA) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTTGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCTTACGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCATAAAACAAAGTGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

35.885

100

0.368