Detailed information NTG0593479

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: K1T36_RS09185
• Genome accession: NZ_CP080512
• Coordinates: 2006106..2008337 (+)
• Length: 743 a.a.
• NCBI ID: WP_220223910.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain CM-YJ10_15-44
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2001106..2013337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K1T36_RS09160 (K1T36_09160)	-	2002231..2002890 (+)	660	WP_220223909.1	transglutaminase family protein	-
K1T36_RS09165 (K1T36_09165)	-	2002933..2003556 (+)	624	WP_011060095.1	glutathione S-transferase family protein	-
K1T36_RS09170 (K1T36_09170)	-	2003689..2004621 (+)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
K1T36_RS09175 (K1T36_09175)	-	2004618..2005397 (+)	780	WP_011060097.1	ABC transporter permease	-
K1T36_RS09180 (K1T36_09180)	-	2005451..2005966 (-)	516	WP_015634695.1	DUF2062 domain-containing protein	-
K1T36_RS09185 (K1T36_09185)	comA	2006106..2008337 (+)	2232	WP_220223910.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
K1T36_RS09190 (K1T36_09190)	exbB	2008440..2009075 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
K1T36_RS09195 (K1T36_09195)	-	2009072..2009500 (+)	429	WP_011060101.1	biopolymer transporter ExbD	-
K1T36_RS09200 (K1T36_09200)	lpxK	2009500..2010510 (+)	1011	WP_015634697.1	tetraacyldisaccharide 4'-kinase	-
K1T36_RS09205 (K1T36_09205)	-	2010535..2010720 (+)	186	WP_011060103.1	Trm112 family protein	-
K1T36_RS09210 (K1T36_09210)	kdsB	2010717..2011481 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
K1T36_RS09215 (K1T36_09215)	-	2011481..2011945 (+)	465	WP_041116777.1	low molecular weight protein-tyrosine-phosphatase	-
K1T36_RS09220 (K1T36_09220)	murB	2011942..2012961 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81319.70 Da
• Isoelectric Point: 10.8644

>NTDB_id=593479 K1T36_RS09185 WP_220223910.1 2006106..2008337(+) (comA) [Pseudomonas protegens strain CM-YJ10_15-44]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWHEGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLAPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLARHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWVPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVQRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLDMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=593479 K1T36_RS09185 WP_220223910.1 2006106..2008337(+) (comA) [Pseudomonas protegens strain CM-YJ10_15-44]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCAGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTCTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGGCTGGCCTGGCATGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GCCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGGCACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCCCAGGGGCGCGGTGCGGGGCTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTCCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGGCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTACGGCCTGCTGGCGGGGTTCGATGTGCCAGTGCAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTTTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTGGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGGTGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCAGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCCCCCCATCACGGCAGCCGCACCTCTTCATC
CATGGCCTTACTGCAACGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCATCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGACATGGCAATTTATGACAGTGCCGAACAGGGCGCCCTGAGGCTGCAACTG
GGGGCCTTCGGAGCGGCGCATGGCCTTCGCGAGCAACGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.575	96.501	0.623