Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K1T67_RS22975 Genome accession   NZ_CP080511
Coordinates   4943161..4943796 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain DJ06     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4938161..4948796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T67_RS22945 (K1T67_22940) murB 4939259..4940278 (-) 1020 WP_023109835.1 UDP-N-acetylmuramate dehydrogenase -
  K1T67_RS22950 (K1T67_22945) - 4940275..4940739 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  K1T67_RS22955 (K1T67_22950) kdsB 4940739..4941503 (-) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K1T67_RS22960 (K1T67_22955) - 4941503..4941688 (-) 186 WP_003091157.1 Trm112 family protein -
  K1T67_RS22965 (K1T67_22960) lpxK 4941726..4942724 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  K1T67_RS22970 (K1T67_22965) - 4942724..4943164 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  K1T67_RS22975 (K1T67_22970) exbB 4943161..4943796 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K1T67_RS22980 (K1T67_22975) comA 4943869..4946094 (-) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K1T67_RS22985 (K1T67_22980) - 4946225..4946758 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  K1T67_RS22990 (K1T67_22985) - 4946846..4948090 (-) 1245 WP_202985993.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=593467 K1T67_RS22975 WP_003091163.1 4943161..4943796(-) (exbB) [Pseudomonas aeruginosa strain DJ06]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=593467 K1T67_RS22975 WP_003091163.1 4943161..4943796(-) (exbB) [Pseudomonas aeruginosa strain DJ06]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81