Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J56_RS02105 Genome accession   NZ_AP018768
Coordinates   429243..429896 (+) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-5 isolate 13H40     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 424243..434896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J56_RS02080 (CHBNII5_03910) - 424661..425665 (-) 1005 WP_005651072.1 ornithine carbamoyltransferase -
  K6J56_RS02085 (CHBNII5_03920) - 426069..426887 (+) 819 WP_044364684.1 Cof-type HAD-IIB family hydrolase -
  K6J56_RS02090 crcB 426887..427261 (+) 375 WP_044364686.1 fluoride efflux transporter CrcB -
  K6J56_RS02095 (CHBNII5_03940) recX 427270..427728 (-) 459 WP_044364687.1 recombination regulator RecX -
  K6J56_RS02100 (CHBNII5_03950) recA 427807..428871 (-) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J56_RS02105 (CHBNII5_03960) sxy/tfoX 429243..429896 (+) 654 WP_005692773.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=59341 K6J56_RS02105 WP_005692773.1 429243..429896(+) (sxy/tfoX) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59341 K6J56_RS02105 WP_005692773.1 429243..429896(+) (sxy/tfoX) [Haemophilus influenzae strain CHBN-II-5 isolate 13H40]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment