Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KTJ85_RS00200 Genome accession   NZ_CP080509
Coordinates   36048..36338 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. 7D3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 31048..41338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ85_RS00160 (KTJ85_00160) darA 31075..31404 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  KTJ85_RS00165 (KTJ85_00165) - 31417..31857 (+) 441 WP_065980523.1 YaaR family protein -
  KTJ85_RS00170 (KTJ85_00170) holB 31869..32858 (+) 990 WP_212100047.1 DNA polymerase III subunit delta' -
  KTJ85_RS00175 (KTJ85_00175) ricT 32861..33688 (+) 828 WP_065980525.1 competence/sporulation regulator complex protein RicT -
  KTJ85_RS00180 (KTJ85_00180) yabA 33703..34062 (+) 360 WP_013350748.1 replication initiation-control protein YabA -
  KTJ85_RS00185 (KTJ85_00185) - 34123..34856 (+) 734 Protein_34 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KTJ85_RS00190 (KTJ85_00190) - 34843..35142 (+) 300 WP_065521836.1 GIY-YIG nuclease family protein -
  KTJ85_RS00195 (KTJ85_00195) rsmI 35117..35998 (+) 882 WP_212100053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KTJ85_RS00200 (KTJ85_00200) abrB 36048..36338 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KTJ85_RS00205 (KTJ85_00205) metG 36821..38812 (+) 1992 WP_115998365.1 methionine--tRNA ligase -
  KTJ85_RS00210 (KTJ85_00210) - 38889..39656 (+) 768 WP_212100057.1 TatD family hydrolase -
  KTJ85_RS00215 (KTJ85_00215) - 39791..41110 (+) 1320 WP_212100060.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=593360 KTJ85_RS00200 WP_169510469.1 36048..36338(-) (abrB) [Bacillus sp. 7D3]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=593360 KTJ85_RS00200 WP_169510469.1 36048..36338(-) (abrB) [Bacillus sp. 7D3]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979