Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K0V03_RS19070 Genome accession   NZ_CP080508
Coordinates   3571949..3572227 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain HD15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3566949..3577227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS19050 (K0V03_19050) panEB 3568137..3569048 (+) 912 WP_032725622.1 ketopantoate reductase family protein -
  K0V03_RS19055 (K0V03_19055) ampS 3569082..3570314 (-) 1233 WP_003232341.1 aminopeptidase -
  K0V03_RS19060 (K0V03_19060) ykpC 3570423..3570557 (-) 135 WP_072175379.1 protein YkpC -
  K0V03_RS19065 (K0V03_19065) mreBH 3570658..3571665 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  K0V03_RS19070 (K0V03_19070) abrB 3571949..3572227 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  K0V03_RS19075 (K0V03_19075) kinC 3572417..3573703 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  K0V03_RS19080 (K0V03_19080) ykqA 3573719..3574546 (+) 828 WP_085186118.1 gamma-glutamylcyclotransferase -
  K0V03_RS19085 (K0V03_19085) ktrC 3574609..3575274 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  K0V03_RS19090 (K0V03_19090) ade 3575430..3577163 (+) 1734 WP_015715822.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=593352 K0V03_RS19070 WP_003244728.1 3571949..3572227(+) (abrB) [Bacillus subtilis strain HD15]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=593352 K0V03_RS19070 WP_003244728.1 3571949..3572227(+) (abrB) [Bacillus subtilis strain HD15]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576