Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   K0V03_RS16725 Genome accession   NZ_CP080508
Coordinates   3144491..3145069 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3139491..3150069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS22480 - 3140002..3140517 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  K0V03_RS22485 - 3140806..3141384 (-) 579 Protein_3249 protoglobin domain-containing protein -
  K0V03_RS16710 (K0V03_16710) comW 3141439..3142968 (-) 1530 WP_085186336.1 FAD-dependent oxidoreductase -
  K0V03_RS16715 (K0V03_16715) yhxC 3143080..3143937 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  K0V03_RS16720 (K0V03_16720) yhzC 3143965..3144198 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  K0V03_RS16725 (K0V03_16725) comK 3144491..3145069 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  K0V03_RS16730 (K0V03_16730) yhxD 3145116..3146015 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  K0V03_RS16735 (K0V03_16735) yhjA 3146232..3146501 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  K0V03_RS16740 (K0V03_16740) yhjB 3146544..3148013 (-) 1470 WP_085186334.1 sodium:solute symporter -
  K0V03_RS16745 (K0V03_16745) yhjC 3148010..3148210 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  K0V03_RS16750 (K0V03_16750) - 3148418..3148780 (-) 363 WP_024571727.1 hypothetical protein -
  K0V03_RS16755 (K0V03_16755) yhjE 3148932..3149555 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  K0V03_RS16760 (K0V03_16760) lepB 3149557..3150063 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=593338 K0V03_RS16725 WP_029317573.1 3144491..3145069(+) (comK) [Bacillus subtilis strain HD15]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=593338 K0V03_RS16725 WP_029317573.1 3144491..3145069(+) (comK) [Bacillus subtilis strain HD15]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995