Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LDH51_RS25110 Genome accession   NZ_CP097001
Coordinates   5109771..5110763 (-) Length   330 a.a.
NCBI ID   WP_000224476.1    Uniprot ID   A7ZTW4
Organism   Escherichia coli strain NCCP 15734     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5104771..5115763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH51_RS25100 yieP 5107663..5108355 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  LDH51_RS25105 mdtD 5108378..5109805 (+) 1428 WP_247963711.1 multidrug transporter subunit MdtD -
  LDH51_RS25110 cytR 5109771..5110763 (-) 993 WP_000224476.1 ribose operon transcriptional repressor RbsR Regulator
  LDH51_RS25115 rbsK 5110767..5111696 (-) 930 WP_001300603.1 ribokinase -
  LDH51_RS25120 rbsB 5111822..5112712 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  LDH51_RS25125 rbsC 5112737..5113702 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  LDH51_RS25130 rbsA 5113707..5115212 (-) 1506 WP_000387756.1 ribose ABC transporter ATP-binding protein RbsA -
  LDH51_RS25135 rbsD 5115220..5115639 (-) 420 WP_001364631.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36584.88 Da        Isoelectric Point: 5.2141

>NTDB_id=593328 LDH51_RS25110 WP_000224476.1 5109771..5110763(-) (cytR) [Escherichia coli strain NCCP 15734]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=593328 LDH51_RS25110 WP_000224476.1 5109771..5110763(-) (cytR) [Escherichia coli strain NCCP 15734]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364