Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K0V03_RS12725 Genome accession   NZ_CP080508
Coordinates   2384155..2384604 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain HD15     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2379155..2389604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS12685 (K0V03_12685) - 2379477..2379674 (+) 198 WP_122060560.1 hypothetical protein -
  K0V03_RS12690 (K0V03_12690) yckC 2379694..2380148 (+) 455 Protein_2470 RDD family protein -
  K0V03_RS12695 (K0V03_12695) yckD 2380230..2380562 (+) 333 WP_046160038.1 YckD family protein -
  K0V03_RS12700 (K0V03_12700) - 2380689..2381111 (+) 423 WP_170939093.1 MarR family winged helix-turn-helix transcriptional regulator -
  K0V03_RS12705 (K0V03_12705) - 2381099..2381440 (+) 342 WP_032724911.1 DUF3147 family protein -
  K0V03_RS12710 (K0V03_12710) - 2381459..2382187 (+) 729 WP_021481826.1 AAA family ATPase -
  K0V03_RS12715 (K0V03_12715) bglC 2382260..2383693 (+) 1434 WP_097080589.1 6-phospho-beta-glucosidase -
  K0V03_RS12720 (K0V03_12720) nin/comJ 2383730..2384128 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  K0V03_RS12725 (K0V03_12725) nucA/comI 2384155..2384604 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  K0V03_RS12730 (K0V03_12730) tlpC 2384772..2386493 (-) 1722 WP_085186742.1 methyl-accepting chemotaxis protein TlpC -
  K0V03_RS12735 (K0V03_12735) hxlB 2386604..2387161 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  K0V03_RS12740 (K0V03_12740) hxlA 2387167..2387799 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  K0V03_RS12745 (K0V03_12745) hxlR 2388032..2388394 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=593328 K0V03_RS12725 WP_003234608.1 2384155..2384604(-) (nucA/comI) [Bacillus subtilis strain HD15]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=593328 K0V03_RS12725 WP_003234608.1 2384155..2384604(-) (nucA/comI) [Bacillus subtilis strain HD15]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98