Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K0V03_RS07570 Genome accession   NZ_CP080508
Coordinates   1397206..1397895 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain HD15     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392206..1402895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS07535 (K0V03_07535) flgN 1392387..1392869 (-) 483 WP_014481048.1 flagellar protein FlgN -
  K0V03_RS07540 (K0V03_07540) flgM 1392885..1393151 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  K0V03_RS07545 (K0V03_07545) yvyF 1393232..1393651 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  K0V03_RS07550 (K0V03_07550) comFC 1393724..1394446 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  K0V03_RS07555 (K0V03_07555) comFB 1394410..1394706 (-) 297 WP_003227989.1 late competence protein ComFB -
  K0V03_RS07560 (K0V03_07560) comFA 1394766..1396157 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  K0V03_RS07565 (K0V03_07565) fakBA 1396263..1397108 (-) 846 WP_085185615.1 DegV family protein -
  K0V03_RS07570 (K0V03_07570) degU 1397206..1397895 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  K0V03_RS07575 (K0V03_07575) degS 1397978..1399135 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  K0V03_RS07580 (K0V03_07580) - 1399352..1400005 (+) 654 WP_014481055.1 YigZ family protein -
  K0V03_RS07585 (K0V03_07585) - 1400005..1400997 (+) 993 WP_014481056.1 LCP family protein -
  K0V03_RS07590 (K0V03_07590) - 1401595..1402059 (+) 465 WP_228394534.1 hypothetical protein -
  K0V03_RS07595 (K0V03_07595) - 1402108..1402563 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=593311 K0V03_RS07570 WP_003219701.1 1397206..1397895(-) (degU) [Bacillus subtilis strain HD15]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=593311 K0V03_RS07570 WP_003219701.1 1397206..1397895(-) (degU) [Bacillus subtilis strain HD15]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1