Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LDH51_RS19095 Genome accession   NZ_CP097001
Coordinates   3849065..3849670 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain NCCP 15734     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3844065..3854670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDH51_RS19075 aes 3844102..3845061 (+) 960 WP_000801846.1 acetyl esterase -
  LDH51_RS19080 hemH 3845058..3846020 (-) 963 WP_001250088.1 ferrochelatase -
  LDH51_RS19085 adk 3846256..3846900 (-) 645 WP_001220233.1 adenylate kinase -
  LDH51_RS19090 htpG 3847081..3848955 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  LDH51_RS19095 recR 3849065..3849670 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  LDH51_RS19100 ybaB 3849670..3849999 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  LDH51_RS19105 dnaX 3850052..3851983 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  LDH51_RS19110 apt 3852112..3852663 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  LDH51_RS19115 ybaN 3852816..3853193 (-) 378 WP_001188905.1 DUF454 family protein -
  LDH51_RS19120 priC 3853263..3853790 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  LDH51_RS19125 rsmS 3853804..3853965 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  LDH51_RS19130 - 3854018..3854116 (-) 99 Protein_3748 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=593303 LDH51_RS19095 WP_001195025.1 3849065..3849670(-) (recR) [Escherichia coli strain NCCP 15734]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=593303 LDH51_RS19095 WP_001195025.1 3849065..3849670(-) (recR) [Escherichia coli strain NCCP 15734]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443