Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K0V03_RS03540 Genome accession   NZ_CP080508
Coordinates   597985..598731 (-) Length   248 a.a.
NCBI ID   WP_085187384.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 592985..603731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS03510 (K0V03_03510) - 593313..593747 (+) 435 WP_163116891.1 helix-turn-helix domain-containing protein -
  K0V03_RS03515 (K0V03_03515) - 593761..594207 (+) 447 WP_163116892.1 ImmA/IrrE family metallo-endopeptidase -
  K0V03_RS03520 (K0V03_03520) - 594238..595674 (+) 1437 WP_164906785.1 recombinase family protein -
  K0V03_RS03525 (K0V03_03525) radC 595687..596094 (-) 408 Protein_706 DNA repair protein RadC -
  K0V03_RS03530 (K0V03_03530) maf 596131..596700 (-) 570 WP_085187390.1 Maf family nucleotide pyrophosphatase -
  K0V03_RS03535 (K0V03_03535) spoIIB 596853..597851 (-) 999 WP_085187387.1 stage II sporulation protein SpoIIB -
  K0V03_RS03540 (K0V03_03540) comC 597985..598731 (-) 747 WP_085187384.1 A24 family peptidase Machinery gene
  K0V03_RS03545 (K0V03_03545) folC 598873..600165 (-) 1293 WP_085187381.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  K0V03_RS03550 (K0V03_03550) valS 600225..602867 (-) 2643 WP_085187377.1 valine--tRNA ligase -
  K0V03_RS03555 (K0V03_03555) - 603315..603506 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26438.99 Da        Isoelectric Point: 9.7944

>NTDB_id=593299 K0V03_RS03540 WP_085187384.1 597985..598731(-) (comC) [Bacillus subtilis strain HD15]
MLSLLFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPSAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=593299 K0V03_RS03540 WP_085187384.1 597985..598731(-) (comC) [Bacillus subtilis strain HD15]
ATGCTATCCCTTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCTCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.79

100

0.988