Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   K0V03_RS01725 Genome accession   NZ_CP080508
Coordinates   294417..295184 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain HD15     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 289417..300184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS01705 (K0V03_01705) ppsR 289592..290404 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  K0V03_RS01710 (K0V03_01710) ccpN 290430..291068 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  K0V03_RS01715 (K0V03_01715) glyS 291201..293240 (-) 2040 WP_015714279.1 glycine--tRNA ligase subunit beta -
  K0V03_RS01720 (K0V03_01720) glyQ 293233..294120 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  K0V03_RS01725 (K0V03_01725) recO 294417..295184 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  K0V03_RS01730 (K0V03_01730) yqzL 295221..295364 (-) 144 WP_003230053.1 YqzL family protein -
  K0V03_RS01735 (K0V03_01735) era 295512..296417 (-) 906 WP_003230051.1 GTPase Era -
  K0V03_RS01740 (K0V03_01740) - 296398..296808 (-) 411 WP_003230049.1 cytidine deaminase -
  K0V03_RS01745 (K0V03_01745) unpK 296927..297298 (-) 372 WP_047182891.1 diacylglycerol kinase family protein -
  K0V03_RS01750 (K0V03_01750) ybeY 297279..297752 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  K0V03_RS01755 (K0V03_01755) pgpH 297753..299888 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=593292 K0V03_RS01725 WP_014477369.1 294417..295184(-) (recO) [Bacillus subtilis strain HD15]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=593292 K0V03_RS01725 WP_014477369.1 294417..295184(-) (recO) [Bacillus subtilis strain HD15]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGCGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGTCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996