Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   K0V03_RS00100 Genome accession   NZ_CP080508
Coordinates   12717..13337 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain HD15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7717..18337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0V03_RS00060 (K0V03_00060) ptsA 8845..9351 (-) 507 WP_085187617.1 PTS glucose transporter subunit IIA -
  K0V03_RS00065 (K0V03_00065) ypqA 9489..9908 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  K0V03_RS00070 (K0V03_00070) sppG 9929..10306 (-) 378 WP_015251832.1 YppG family protein -
  K0V03_RS00075 (K0V03_00075) yppF 10494..10682 (+) 189 WP_003230690.1 YppF family protein -
  K0V03_RS00080 (K0V03_00080) yppE 10724..11095 (-) 372 WP_029726786.1 YppE family protein -
  K0V03_RS00085 (K0V03_00085) yppD 11141..11386 (-) 246 WP_015251831.1 YppD family protein -
  K0V03_RS00090 (K0V03_00090) sspM 11585..11689 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  K0V03_RS00095 (K0V03_00095) yppC 11714..12676 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  K0V03_RS00100 (K0V03_00100) recU 12717..13337 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  K0V03_RS00105 (K0V03_00105) ponA 13359..16103 (+) 2745 WP_085187417.1 PBP1A family penicillin-binding protein -
  K0V03_RS00110 (K0V03_00110) ypoC 16179..16673 (-) 495 WP_043857712.1 YpoC family protein -
  K0V03_RS00115 (K0V03_00115) nth 16670..17329 (-) 660 WP_009967580.1 endonuclease III -
  K0V03_RS00120 (K0V03_00120) dnaD 17348..18046 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=593280 K0V03_RS00100 WP_004399067.1 12717..13337(+) (recU) [Bacillus subtilis strain HD15]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=593280 K0V03_RS00100 WP_004399067.1 12717..13337(+) (recU) [Bacillus subtilis strain HD15]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1