Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K1X80_RS24800 Genome accession   NZ_CP080494
Coordinates   5507688..5509055 (-) Length   455 a.a.
NCBI ID   WP_057441136.1    Uniprot ID   A0A2G0Z110
Organism   Pseudomonas sp. So3.2b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5502688..5514055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X80_RS24780 (K1X80_24780) yjiA 5503602..5504561 (-) 960 WP_169990509.1 GTPase -
  K1X80_RS24785 (K1X80_24785) - 5504740..5504937 (-) 198 WP_057441132.1 YbdD/YjiX family protein -
  K1X80_RS24790 (K1X80_24790) - 5504953..5507019 (-) 2067 WP_057958380.1 carbon starvation CstA family protein -
  K1X80_RS24795 (K1X80_24795) - 5507193..5507561 (+) 369 WP_057441134.1 PilZ domain-containing protein -
  K1X80_RS24800 (K1X80_24800) radA 5507688..5509055 (-) 1368 WP_057441136.1 DNA repair protein RadA Machinery gene
  K1X80_RS24805 (K1X80_24805) - 5509091..5509621 (-) 531 WP_186625038.1 ankyrin repeat domain-containing protein -
  K1X80_RS24810 (K1X80_24810) - 5509700..5511241 (-) 1542 WP_220172541.1 catalase -
  K1X80_RS24815 (K1X80_24815) mscL 5511529..5511945 (+) 417 WP_057441140.1 large-conductance mechanosensitive channel protein MscL -
  K1X80_RS24820 (K1X80_24820) - 5512002..5512778 (-) 777 WP_057441142.1 ferredoxin--NADP reductase -
  K1X80_RS24825 (K1X80_24825) - 5513235..5513945 (+) 711 WP_057441143.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48701.15 Da        Isoelectric Point: 6.8987

>NTDB_id=593259 K1X80_RS24800 WP_057441136.1 5507688..5509055(-) (radA) [Pseudomonas sp. So3.2b]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPSGRSGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=593259 K1X80_RS24800 WP_057441136.1 5507688..5509055(-) (radA) [Pseudomonas sp. So3.2b]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGTGGCGAGTG
TGGGGCGTGGAACACCCTCACGGAAACCATGATTGAAAGCGGTGGCGCCGCAGCTCCCAGCGGGCGCTCCGGCTGGACCG
GGCAACAAGCCCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATCCCGCGCTTTTCCACGGCGTCCGGCGAGCTC
GACCGGGTACTCGGTGGTGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGTGGCGATCCGGGCATCGGCAAGTCGACCAT
CCTCTTGCAGACCCTGTGCAGCATCGCCAGCCGCATGCCAGCCCTGTACGTCACCGGCGAAGAATCCCAGCAACAGGTGG
CCATGCGCGCCCGCCGCCTGGGCTTGCCCCAGGACCAATTGCGGGTCATGACCGAGACCTGTATCGAAAGCATTATCGCC
ACCGCCCGCGTGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAGCAACTGCAATCGGCGCC
GGGAGGGGTGTCCCAGGTGCGGGAAAGTGCGGCGTTGCTGGTGCGTTACGCGAAACAGAGCGGCACGGCGATTTTCCTGG
TGGGCCATGTCACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTGGAGCATATGGTGGATACGGTGCTGTATTTCGAG
GGCGAGTCCGATGGGCGCCTGCGCCTGTTGCGGGCGGTGAAAAACCGTTTTGGCGCGGTCAACGAGCTGGGGGTGTTCGC
CATGACGGACCGGGGGCTGAAAGAAGTCTCCAACCCTTCGGCGATCTTTCTGACCCGCGCCCAGGAAGAAGTACCGGGCA
GCGTGGTGATGGCAACGTGGGAAGGTACCCGGCCAATGCTGGTGGAAGTCCAGGCTTTGGTGGACGACAGCCATCTGGCC
AACCCGCGCCGCGTGACCCTGGGCCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTATTGCATCGCCATGGCGGGAT
TCCGACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGCGTCAAGGTGCTGGAAACCGCGTCTGACCTGGCCTTGA
TGGCGGCGGTCATGTCGAGCCTACGCAATCGGCCGTTGCCCCATGACCTGTTGGTATTTGGTGAAGTGGGCCTGTCGGGC
GAGGTACGCCCGGTGCCCAGCGGCCAGGAGCGCCTCAAGGAAGCCGCCAAGCATGGTTTCAAGCGTGCCATCGTGCCCAA
GGGCAACGCGCCGAAGGAGGCGCCGCCCGGGTTGCAGGTGATTGCGGTGACGCGGCTGGAACAGGCACTGGATGCCTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G0Z110

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468