Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K1X80_RS21205 Genome accession   NZ_CP080494
Coordinates   4736532..4737167 (-) Length   211 a.a.
NCBI ID   WP_029299724.1    Uniprot ID   A0AAJ3B5Y0
Organism   Pseudomonas sp. So3.2b     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4731532..4742167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1X80_RS21170 (K1X80_21170) - 4731931..4732401 (-) 471 WP_057960403.1 (2Fe-2S)-binding protein -
  K1X80_RS21175 (K1X80_21175) murB 4732646..4733665 (-) 1020 WP_200659463.1 UDP-N-acetylmuramate dehydrogenase -
  K1X80_RS21180 (K1X80_21180) - 4733662..4734126 (-) 465 WP_057960405.1 low molecular weight protein-tyrosine-phosphatase -
  K1X80_RS21185 (K1X80_21185) kdsB 4734126..4734890 (-) 765 WP_057960406.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K1X80_RS21190 (K1X80_21190) - 4734887..4735072 (-) 186 WP_003174668.1 Trm112 family protein -
  K1X80_RS21195 (K1X80_21195) lpxK 4735097..4736107 (-) 1011 WP_169990641.1 tetraacyldisaccharide 4'-kinase -
  K1X80_RS21200 (K1X80_21200) - 4736107..4736535 (-) 429 WP_029299722.1 biopolymer transporter ExbD -
  K1X80_RS21205 (K1X80_21205) exbB 4736532..4737167 (-) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K1X80_RS21210 (K1X80_21210) - 4737243..4739496 (-) 2254 Protein_4220 DNA internalization-related competence protein ComEC/Rec2 -
  K1X80_RS21215 (K1X80_21215) - 4739633..4740148 (+) 516 WP_057960409.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.06 Da        Isoelectric Point: 6.8772

>NTDB_id=593253 K1X80_RS21205 WP_029299724.1 4736532..4737167(-) (exbB) [Pseudomonas sp. So3.2b]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPDHLLGQVWRWIKDKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=593253 K1X80_RS21205 WP_029299724.1 4736532..4737167(-) (exbB) [Pseudomonas sp. So3.2b]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCCGCACTCGGCATTGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTGTAACCCCTGATCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGGACAAGGAAAAGCTCAAGGAACTGCGGGCCAATTCCCCTCTGGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATTGAAGAAGCCGCCGCCCGGGTAATCCACGAACTGGAGCGCTATAT
CAATGCCCTGGGCACCATCGCGGCAATGGCGCCATTGCTGGGCTTGCTTGGCACCGTGCTGGGCATGATTGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAACGCCTCGGTATTGGCCGGGGGTATTTCCAAGGCCCTGATCACCACGGCG
GCGGGCCTGATGGTGGGGATCCCAGCGGTGTTTTTCCACCGATTCCTGCAACGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCAATCAAGCTGGTGGAAGTGGTCCAGGGCGACCGTGATGTCGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867