Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   M2894_RS24300 Genome accession   NZ_CP096976
Coordinates   4996996..4998021 (+) Length   341 a.a.
NCBI ID   WP_248910680.1    Uniprot ID   -
Organism   Escherichia coli strain 17-07187     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4991996..5003021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2894_RS24290 (M2894_24290) rpmE 4994227..4994439 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  M2894_RS24295 (M2894_24295) priA 4994642..4996840 (+) 2199 WP_001350069.1 primosomal protein N' Machinery gene
  M2894_RS24300 (M2894_24300) cytR 4996996..4998021 (+) 1026 WP_248910680.1 DNA-binding transcriptional regulator CytR Regulator
  M2894_RS24305 (M2894_24305) ftsN 4998113..4999072 (+) 960 WP_000068834.1 cell division protein FtsN -
  M2894_RS24310 (M2894_24310) hslV 4999165..4999695 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  M2894_RS24315 (M2894_24315) hslU 4999705..5001036 (+) 1332 WP_001293343.1 HslU--HslV peptidase ATPase subunit -
  M2894_RS24320 (M2894_24320) menA 5001103..5002029 (+) 927 WP_001307494.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  M2894_RS24325 (M2894_24325) rraA 5002122..5002607 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  M2894_RS24330 (M2894_24330) zapB 5002692..5002937 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37814.76 Da        Isoelectric Point: 6.3001

>NTDB_id=593243 M2894_RS24300 WP_248910680.1 4996996..4998021(+) (cytR) [Escherichia coli strain 17-07187]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRIEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALHRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=593243 M2894_RS24300 WP_248910680.1 4996996..4998021(+) (cytR) [Escherichia coli strain 17-07187]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGATTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCATCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

63.582

98.24

0.625
  cytR Vibrio cholerae C6706

64.832

95.894

0.622