Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   K0819_RS22645 Genome accession   NZ_CP080479
Coordinates   1496143..1497240 (-) Length   365 a.a.
NCBI ID   WP_109885140.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491143..1502240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS22630 (K0819_22535) - 1491807..1492862 (-) 1056 WP_109885136.1 HlyD family secretion protein -
  K0819_RS22635 (K0819_22540) - 1492900..1493355 (-) 456 WP_172960657.1 MarR family transcriptional regulator -
  K0819_RS22640 (K0819_22545) luxQ 1493567..1496143 (-) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  K0819_RS22645 (K0819_22550) luxP 1496143..1497240 (-) 1098 WP_109885140.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  K0819_RS22650 (K0819_22555) - 1497592..1497912 (-) 321 WP_062889020.1 GIY-YIG nuclease family protein -
  K0819_RS22655 (K0819_22560) - 1497909..1498559 (-) 651 WP_005499314.1 YceH family protein -
  K0819_RS22660 (K0819_22565) - 1498736..1498951 (-) 216 WP_025558322.1 hypothetical protein -
  K0819_RS22665 (K0819_22570) - 1499279..1499593 (+) 315 WP_005453573.1 DUF496 family protein -
  K0819_RS22670 (K0819_22575) - 1499716..1501053 (+) 1338 WP_005463462.1 MATE family efflux transporter -
  K0819_RS22675 (K0819_22580) - 1501127..1502104 (-) 978 WP_109885142.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41309.64 Da        Isoelectric Point: 5.0568

>NTDB_id=593214 K0819_RS22645 WP_109885140.1 1496143..1497240(-) (luxP) [Vibrio parahaemolyticus strain Vp2015094]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWEARQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=593214 K0819_RS22645 WP_109885140.1 1496143..1497240(-) (luxP) [Vibrio parahaemolyticus strain Vp2015094]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAATATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTTGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTTCGTGAATGGGAAGCTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644