Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K0819_RS20225 Genome accession   NZ_CP080479
Coordinates   951621..952802 (-) Length   393 a.a.
NCBI ID   WP_109884878.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 946621..957802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS20210 (K0819_20130) - 947923..948471 (+) 549 WP_140202078.1 GNAT family N-acetyltransferase -
  K0819_RS20215 (K0819_20135) - 948558..949175 (-) 618 WP_031856134.1 HAD family hydrolase -
  K0819_RS20220 (K0819_20140) cqsS 949495..951543 (+) 2049 WP_109884876.1 response regulator Regulator
  K0819_RS20225 (K0819_20145) cqsA 951621..952802 (-) 1182 WP_109884878.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K0819_RS20230 (K0819_20150) ylqF 953157..954101 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  K0819_RS20235 (K0819_20155) - 954390..955127 (-) 738 WP_172960634.1 EAL domain-containing protein -
  K0819_RS20240 (K0819_20160) - 955307..957541 (-) 2235 WP_180912787.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43811.18 Da        Isoelectric Point: 6.6125

>NTDB_id=593212 K0819_RS20225 WP_109884878.1 951621..952802(-) (cqsA) [Vibrio parahaemolyticus strain Vp2015094]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNLPVYIDFFAHMSLWEGARTAGAQVHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPSKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=593212 K0819_RS20225 WP_109884878.1 951621..952802(-) (cqsA) [Vibrio parahaemolyticus strain Vp2015094]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACCTCCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAGGGAGCACGCACCGCTGGAGCGCAGGTTCATCCTTTCATGCATAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCTCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAGCAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCACAAGAAGTCGTGCGTTTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTTTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575