Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M2894_RS09495 Genome accession   NZ_CP096976
Coordinates   1993390..1994817 (-) Length   475 a.a.
NCBI ID   WP_170903133.1    Uniprot ID   -
Organism   Escherichia coli strain 17-07187     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988390..1999817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2894_RS09465 (M2894_09465) yeeZ 1988446..1989270 (+) 825 WP_170903132.1 SDR family oxidoreductase -
  M2894_RS09470 (M2894_09470) yeeY 1989316..1990244 (+) 929 Protein_1856 LysR substrate-binding domain-containing protein -
  M2894_RS09475 (M2894_09475) yoeI 1990459..1990521 (+) 63 WP_010723108.1 membrane protein YoeI -
  M2894_RS09480 (M2894_09480) plaP 1990511..1991869 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  M2894_RS09485 (M2894_09485) tsuA 1992048..1993106 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  M2894_RS09490 (M2894_09490) tsuB 1993120..1993347 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  M2894_RS09495 (M2894_09495) sbcB 1993390..1994817 (-) 1428 WP_170903133.1 exodeoxyribonuclease I Machinery gene
  M2894_RS09500 (M2894_09500) dacD 1995026..1996192 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  M2894_RS09505 (M2894_09505) sbmC 1996311..1996784 (+) 474 WP_170903134.1 DNA gyrase inhibitor SbmC -
  M2894_RS09510 (M2894_09510) - 1996982..1997533 (+) 552 Protein_1864 FUSC family protein -
  M2894_RS09515 (M2894_09515) - 1997726..1998707 (+) 982 Protein_1865 IS110-like element IS621 family transposase -
  M2894_RS09520 (M2894_09520) - 1998802..1999320 (+) 519 Protein_1866 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.77 Da        Isoelectric Point: 5.4699

>NTDB_id=593206 M2894_RS09495 WP_170903133.1 1993390..1994817(-) (sbcB) [Escherichia coli strain 17-07187]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFCDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=593206 M2894_RS09495 WP_170903133.1 1993390..1994817(-) (sbcB) [Escherichia coli strain 17-07187]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCTGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581