Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K0819_RS02830 Genome accession   NZ_CP080478
Coordinates   577383..577901 (+) Length   172 a.a.
NCBI ID   WP_109884274.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 572383..582901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS02820 (K0819_02835) gshA 575118..576686 (+) 1569 WP_005462538.1 glutamate--cysteine ligase -
  K0819_RS02825 (K0819_02840) - 576711..577316 (+) 606 WP_015297256.1 hypothetical protein -
  K0819_RS02830 (K0819_02845) luxS 577383..577901 (+) 519 WP_109884274.1 S-ribosylhomocysteine lyase Regulator
  K0819_RS02835 (K0819_02850) - 577963..579243 (-) 1281 WP_005462557.1 HlyC/CorC family transporter -
  K0819_RS02840 (K0819_02855) - 579369..580163 (-) 795 WP_005462565.1 cytochrome C assembly family protein -
  K0819_RS02845 (K0819_02860) ffh 580376..581758 (+) 1383 WP_005462555.1 signal recognition particle protein -
  K0819_RS02850 (K0819_02865) rpsP 581968..582216 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  K0819_RS02855 (K0819_02870) rimM 582245..582793 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19063.76 Da        Isoelectric Point: 4.7134

>NTDB_id=593185 K0819_RS02830 WP_109884274.1 577383..577901(+) (luxS) [Vibrio parahaemolyticus strain Vp2015094]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILTAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=593185 K0819_RS02830 WP_109884274.1 577383..577901(+) (luxS) [Vibrio parahaemolyticus strain Vp2015094]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAACCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878