Detailed information NTG0593182

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K0819_RS02700
• Genome accession: NZ_CP080478
• Coordinates: 554798..555787 (+)
• Length: 329 a.a.
• NCBI ID: WP_272591711.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain Vp2015094
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 549798..560787

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K0819_RS02665 (K0819_02680)	ftsB	549806..550087 (+)	282	WP_005455577.1	cell division protein FtsB	-
K0819_RS02670 (K0819_02685)	ispD	550089..550793 (+)	705	WP_109884280.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K0819_RS02675 (K0819_02690)	ispF	550811..551287 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K0819_RS02680 (K0819_02695)	truD	551334..552377 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
K0819_RS02685 (K0819_02700)	surE	552377..553153 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
K0819_RS02690 (K0819_02705)	-	553153..553779 (+)	627	WP_053301516.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K0819_RS02695 (K0819_02710)	-	553794..554717 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
K0819_RS02700 (K0819_02715)	rpoS	554798..555787 (+)	990	WP_272591711.1	RNA polymerase sigma factor RpoS	Regulator
K0819_RS02705 (K0819_02720)	mutS	555866..558427 (-)	2562	WP_109884276.1	DNA mismatch repair protein MutS	-
K0819_RS02710 (K0819_02725)	pncC	558512..558994 (+)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
K0819_RS02715 (K0819_02730)	recA	559195..560238 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37546.35 Da
• Isoelectric Point: 4.6096

>NTDB_id=593182 K0819_RS02700 WP_272591711.1 554798..555787(+) (rpoS) [Vibrio parahaemolyticus strain Vp2015094]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAV
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=593182 K0819_RS02700 WP_272591711.1 554798..555787(+) (rpoS) [Vibrio parahaemolyticus strain Vp2015094]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCAGTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACTCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.848