Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   M2J01_RS23730 Genome accession   NZ_CP096964
Coordinates   5121368..5122810 (-) Length   480 a.a.
NCBI ID   WP_058161145.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY13936     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5116368..5127810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS23700 (M2J01_23650) - 5116694..5117809 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  M2J01_RS23705 (M2J01_23655) - 5117802..5118563 (+) 762 WP_058134690.1 DUF2334 domain-containing protein -
  M2J01_RS23710 (M2J01_23660) - 5118560..5119561 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  M2J01_RS23715 (M2J01_23665) - 5119536..5119748 (-) 213 WP_023436359.1 hypothetical protein -
  M2J01_RS23720 (M2J01_23670) purU 5119798..5120649 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  M2J01_RS23725 (M2J01_23675) mvaT 5120909..5121283 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  M2J01_RS23730 (M2J01_23680) sbcB 5121368..5122810 (-) 1443 WP_058161145.1 exodeoxyribonuclease I Machinery gene
  M2J01_RS23735 (M2J01_23685) - 5123035..5123772 (+) 738 WP_003101171.1 hypothetical protein -
  M2J01_RS23740 (M2J01_23690) - 5123810..5124607 (+) 798 WP_003120853.1 RDD family protein -
  M2J01_RS23745 (M2J01_23695) - 5124604..5125584 (+) 981 WP_003134640.1 stage II sporulation protein M -
  M2J01_RS23750 (M2J01_23700) - 5125571..5127142 (+) 1572 WP_058161143.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55463.73 Da        Isoelectric Point: 5.5542

>NTDB_id=593125 M2J01_RS23730 WP_058161145.1 5121368..5122810(-) (sbcB) [Pseudomonas aeruginosa strain NY13936]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQARLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=593125 M2J01_RS23730 WP_058161145.1 5121368..5122810(-) (sbcB) [Pseudomonas aeruginosa strain NY13936]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCACGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTTCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGTAAGCACAAGGTGCTCG
ACCAGGCGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44