Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   K1T75_RS11630 Genome accession   NZ_CP080465
Coordinates   2564383..2565390 (-) Length   335 a.a.
NCBI ID   WP_000116737.1    Uniprot ID   O51804
Organism   Vibrio cholerae strain ICDC-VC3741     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2559383..2570390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T75_RS11620 cysM 2560547..2561434 (+) 888 WP_001279365.1 cysteine synthase CysM -
  K1T75_RS11625 mutS 2561702..2564290 (+) 2589 WP_001894770.1 DNA mismatch repair protein MutS -
  K1T75_RS11630 rpoS 2564383..2565390 (-) 1008 WP_000116737.1 RNA polymerase sigma factor RpoS Regulator
  K1T75_RS11635 nlpD 2565464..2566399 (-) 936 WP_000177568.1 murein hydrolase activator NlpD -
  K1T75_RS11640 - 2566399..2567025 (-) 627 WP_000002982.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  K1T75_RS11645 surE 2567018..2567770 (-) 753 WP_000698379.1 5'/3'-nucleotidase SurE -
  K1T75_RS11650 truD 2567772..2568857 (-) 1086 WP_000129752.1 tRNA pseudouridine(13) synthase TruD -
  K1T75_RS11655 ispF 2568887..2569363 (-) 477 WP_000619209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K1T75_RS11660 ispD 2569360..2570058 (-) 699 WP_001061951.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  K1T75_RS11665 ftsB 2570055..2570339 (-) 285 WP_001263189.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38534.39 Da        Isoelectric Point: 4.3648

>NTDB_id=593113 K1T75_RS11630 WP_000116737.1 2564383..2565390(-) (rpoS) [Vibrio cholerae strain ICDC-VC3741]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=593113 K1T75_RS11630 WP_000116737.1 2564383..2565390(-) (rpoS) [Vibrio cholerae strain ICDC-VC3741]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O51804

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1