Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   M2J01_RS20185 Genome accession   NZ_CP096964
Coordinates   4347021..4347377 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain NY13936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4342021..4352377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS20160 (M2J01_20115) - 4342387..4343019 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  M2J01_RS20165 (M2J01_20120) - 4343084..4343980 (-) 897 WP_058160222.1 radical SAM protein -
  M2J01_RS20170 (M2J01_20125) - 4344147..4344785 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  M2J01_RS20175 (M2J01_20130) - 4344871..4346004 (+) 1134 WP_023106226.1 aminotransferase class V-fold PLP-dependent enzyme -
  M2J01_RS20180 (M2J01_20135) - 4346230..4347006 (-) 777 WP_003091117.1 TatD family hydrolase -
  M2J01_RS20185 (M2J01_20140) pilZ 4347021..4347377 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  M2J01_RS20190 (M2J01_20145) - 4347411..4348397 (-) 987 WP_058160223.1 DNA polymerase III subunit delta' -
  M2J01_RS20195 (M2J01_20150) tmk 4348390..4349022 (-) 633 WP_003122486.1 dTMP kinase -
  M2J01_RS20200 (M2J01_20155) mltG 4349051..4350100 (-) 1050 WP_058160242.1 endolytic transglycosylase MltG -
  M2J01_RS20205 (M2J01_20160) pabC 4350106..4350921 (-) 816 WP_031639022.1 aminodeoxychorismate lyase -
  M2J01_RS20210 (M2J01_20165) fabF 4350921..4352165 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=593113 M2J01_RS20185 WP_003091119.1 4347021..4347377(-) (pilZ) [Pseudomonas aeruginosa strain NY13936]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=593113 M2J01_RS20185 WP_003091119.1 4347021..4347377(-) (pilZ) [Pseudomonas aeruginosa strain NY13936]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449