Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   M2J01_RS00100 Genome accession   NZ_CP096964
Coordinates   21500..22525 (+) Length   341 a.a.
NCBI ID   WP_058159876.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain NY13936     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16500..27525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2J01_RS00075 (M2J01_00075) - 16689..17006 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  M2J01_RS00080 (M2J01_00080) trkA 17155..18528 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  M2J01_RS00085 (M2J01_00085) rsmB 18555..19859 (-) 1305 WP_058159872.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  M2J01_RS00090 (M2J01_00090) fmt 19856..20800 (-) 945 WP_058159874.1 methionyl-tRNA formyltransferase -
  M2J01_RS00095 (M2J01_00095) def 20855..21361 (-) 507 WP_003097293.1 peptide deformylase -
  M2J01_RS00100 (M2J01_00100) tsaP 21500..22525 (+) 1026 WP_058159876.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  M2J01_RS00105 (M2J01_00105) dprA 22660..23748 (+) 1089 WP_058159879.1 DNA-processing protein DprA Machinery gene
  M2J01_RS00110 (M2J01_00110) - 23789..24346 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  M2J01_RS00115 (M2J01_00115) - 24356..25333 (-) 978 WP_058159881.1 NADPH:quinone reductase -
  M2J01_RS00120 (M2J01_00120) hemF 25524..26441 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  M2J01_RS00125 (M2J01_00125) aroE 26499..27323 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37614.06 Da        Isoelectric Point: 9.3358

>NTDB_id=593065 M2J01_RS00100 WP_058159876.1 21500..22525(+) (tsaP) [Pseudomonas aeruginosa strain NY13936]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLVLTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=593065 M2J01_RS00100 WP_058159876.1 21500..22525(+) (tsaP) [Pseudomonas aeruginosa strain NY13936]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAACCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGTGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGTGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393