Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   K1T74_RS12395 Genome accession   NZ_CP080462
Coordinates   2708985..2709992 (-) Length   335 a.a.
NCBI ID   WP_000116735.1    Uniprot ID   A0A085SEX1
Organism   Vibrio cholerae strain ICDC-VC702     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703985..2714992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS12385 cysM 2705149..2706036 (+) 888 WP_019829698.1 cysteine synthase CysM -
  K1T74_RS12390 mutS 2706304..2708892 (+) 2589 WP_142727364.1 DNA mismatch repair protein MutS -
  K1T74_RS12395 rpoS 2708985..2709992 (-) 1008 WP_000116735.1 RNA polymerase sigma factor RpoS Regulator
  K1T74_RS12400 nlpD 2710066..2711001 (-) 936 WP_000177561.1 murein hydrolase activator NlpD -
  K1T74_RS12405 - 2711001..2711627 (-) 627 WP_220105829.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  K1T74_RS12410 surE 2711620..2712372 (-) 753 WP_000698381.1 5'/3'-nucleotidase SurE -
  K1T74_RS12415 truD 2712374..2713459 (-) 1086 WP_071187180.1 tRNA pseudouridine(13) synthase TruD -
  K1T74_RS12420 ispF 2713489..2713965 (-) 477 WP_000619207.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  K1T74_RS12425 ispD 2713962..2714660 (-) 699 WP_148516632.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  K1T74_RS12430 ftsB 2714657..2714941 (-) 285 WP_001263189.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38504.37 Da        Isoelectric Point: 4.3648

>NTDB_id=593065 K1T74_RS12395 WP_000116735.1 2708985..2709992(-) (rpoS) [Vibrio cholerae strain ICDC-VC702]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=593065 K1T74_RS12395 WP_000116735.1 2708985..2709992(-) (rpoS) [Vibrio cholerae strain ICDC-VC702]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTTACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAATGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085SEX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

99.701

100

0.997