Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K1T74_RS12255 Genome accession   NZ_CP080462
Coordinates   2682497..2683015 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2677497..2688015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS12230 rimM 2677607..2678161 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  K1T74_RS12235 rpsP 2678189..2678437 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  K1T74_RS12240 ffh 2678673..2680058 (-) 1386 WP_000462721.1 signal recognition particle protein -
  K1T74_RS12245 - 2680271..2681064 (+) 794 Protein_2391 inner membrane protein YpjD -
  K1T74_RS12250 - 2681147..2682427 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  K1T74_RS12255 luxS 2682497..2683015 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  K1T74_RS12260 gshA 2683064..2684638 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  K1T74_RS12265 - 2684750..2687605 (-) 2856 WP_220105826.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=593062 K1T74_RS12255 WP_001130227.1 2682497..2683015(-) (luxS) [Vibrio cholerae strain ICDC-VC702]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=593062 K1T74_RS12255 WP_001130227.1 2682497..2683015(-) (luxS) [Vibrio cholerae strain ICDC-VC702]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1