Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K1T74_RS08490 Genome accession   NZ_CP080462
Coordinates   1830762..1832186 (+) Length   474 a.a.
NCBI ID   WP_220105646.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC702     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825762..1837186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T74_RS08470 - 1826158..1826943 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  K1T74_RS08475 cobT 1826943..1827968 (-) 1026 WP_000887082.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  K1T74_RS08480 msrB 1828453..1828899 (-) 447 WP_057563140.1 peptide-methionine (R)-S-oxide reductase MsrB -
  K1T74_RS08485 - 1829245..1830618 (+) 1374 WP_220105645.1 L-cystine transporter -
  K1T74_RS08490 sbcB 1830762..1832186 (+) 1425 WP_220105646.1 exodeoxyribonuclease I Machinery gene
  K1T74_RS08495 - 1832218..1832592 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  K1T74_RS08500 - 1832583..1833257 (+) 675 WP_220105647.1 LrgB family protein -
  K1T74_RS08505 cdd 1833427..1834314 (+) 888 WP_220105648.1 cytidine deaminase -
  K1T74_RS08510 - 1834473..1835348 (+) 876 WP_220105649.1 AEC family transporter -
  K1T74_RS08515 purT 1835502..1836677 (+) 1176 WP_220105650.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54514.93 Da        Isoelectric Point: 6.1702

>NTDB_id=593053 K1T74_RS08490 WP_220105646.1 1830762..1832186(+) (sbcB) [Vibrio cholerae strain ICDC-VC702]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIAREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTTPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=593053 K1T74_RS08490 WP_220105646.1 1830762..1832186(+) (sbcB) [Vibrio cholerae strain ICDC-VC702]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCCATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGCCCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTACACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989